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AT4G37780.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : myb domain protein 87
Curator
Summary (TAIR10)
encoded by the Myb-like transcription factor MYB87, regulates axillary meristem formation, expressed throughout the plant. Member of the R2R3 factor gene family.
Computational
Description (TAIR10)
myb domain protein 87 (MYB87); CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), Myb transcription factor (InterPro:IPR015495), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: myb domain protein 68 (TAIR:AT5G65790.1); Has 8573 Blast hits to 8093 proteins in 467 species: Archae - 0; Bacteria - 0; Metazoa - 622; Fungi - 441; Plants - 5850; Viruses - 3; Other Eukaryotes - 1657 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5147eggNOG:KOG0048EMBL:CP002687EnsemblPlants:AT4G37780
EnsemblPlants:AT4G37780.1entrez:829934Gene3D:1.10.10.60GeneID:829934
GO:GO:0003677GO:GO:0003700GO:GO:0006355Gramene:AT4G37780.1
hmmpanther:PTHR10641hmmpanther:PTHR10641:SF472InParanoid:F4JSU0InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017930KEGG:ath:AT4G37780KO:K09422
OMA:YITIGSRPaxDb:F4JSU0Pfam:PF00249Pfscan:PS51294
PROSITE:PS51294ProteinModelPortal:F4JSU0Proteomes:UP000006548RefSeq:NP_195492.2
SMART:SM00717SMR:F4JSU0STRING:3702.AT4G37780.1SUPFAM:SSF46689
TAIR:AT4G37780tair10-symbols:ATMYB87tair10-symbols:MYB87UniGene:At.10923
UniProt:F4JSU0
Coordinates (TAIR10) chr4:-:17758404..17759526
Molecular Weight (calculated) 34967.70 Da
IEP (calculated) 5.95
GRAVY (calculated) -0.71
Length 305 amino acids
Sequence (TAIR10)
(BLAST)
001: MGRAPCCDKM AVKKGPWSTE EDAVLKSYIE KHGTGNNWIS LPQRIGIKRC GKSCRLRWLN YLRPNLKHGG FTDEEDYIIC SLYITIGSRW SIIASQLPGR
101: TDNDIKNYWN TRLKKKLLSK QGKAFHQQLN VKFERGTTSS SSSQNQIQIF HDENTKSNQT LYNQVVDPSM RAFAMEEQSM IKNQILEPFS WEPNKVLFDV
201: DYDAAASSYH HHASPSLNSM SSTSSIGTNN SSLQMSHYTV NHNDHDQPDM FFMDGFENFQ AELFDEIANN NTVENGFDGT EILINNNYLD HDISSFIDYP
301: LYDNE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)