AT4G31690.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
|||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : Transcriptional factor B3 family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: chloroplast envelope; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31680.1); Has 753 Blast hits to 472 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 753; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:-:15343327..15345161 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51459.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.34 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.63 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 461 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MANASPLSPT NQHFFQPLLP GFQSNLKIPV NYFSEHIEGK HEGKTVTLRT DASERTWEVK MEGHRLTEGW KEFVEAHDLR IGDFVVFRHE GDMVFHVTAL 101: GPSCCEIQYP QSSRHEEGEE SGENEISEKE GEENVQKESD KSSSDLNCFS QSVTHSNISR DAVSVPRDFV KRSGFSKGRH EIVLMNEEGK SWESEVKSYM 201: SGAVYLVGGW TTFCTENKLD VGDSCTFKLL QKAKTPVFQL CSRTKHLPLS FTKVNGLINP GKIILVDKDR AEWSMMLKVD SRGAVYIIGG NDWKSFCAAN 301: EVGAGESLAL ELIQGGVLLN QITTCFQMEQ PSFKAEDGRH KRARVQNRSQ ETDKGAETSR ASTMGPKLEI TEKGEPSRAS TMRPKVEIRE KIAETGEPSR 401: ASNKSSGIEG NLQHTKPCSV KTDQLAKVKE SVVDTLTSIG RFQAELETMK RKLEDSLQEL N |
||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)