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AT4G24973.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Plant self-incompatibility protein S1 family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Plant self-incompatibility protein S1 family; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Plant self-incompatibility S1 (InterPro:IPR010264); BEST Arabidopsis thaliana protein match is: Plant self-incompatibility protein S1 family (TAIR:AT4G24975.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JNZIeggNOG:ENOG411149SEMBL:CP002687EnsemblPlants:AT4G24973
EnsemblPlants:AT4G24973.1entrez:6240286GeneID:6240286Gramene:AT4G24973.1
hmmpanther:PTHR31232hmmpanther:PTHR31232:SF6HOGENOM:HOG000015157InterPro:IPR010264
KEGG:ath:AT4G24973OMA:CHFVWENPaxDb:B3H730Pfam:PF05938
PhylomeDB:B3H730Proteomes:UP000006548RefSeq:NP_001119049.1STRING:3702.AT4G24973.1
TAIR:AT4G24973TMHMM:TMhelixUniGene:At.73480UniProt:B3H730
Coordinates (TAIR10) chr4:+:12840970..12841374
Molecular Weight (calculated) 15422.70 Da
IEP (calculated) 7.73
GRAVY (calculated) -0.01
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MCPSSFRLIL SVILIAFLFV GLCEAHRHIN VDIINDIGPN VQLGLHCKSK GKDLGPQSLA PHQHWGFTAS LNVWETTLFF CHFVWENQSR WFDILKEKRD
101: TIVCKYHPCV WSIRPSGPCR LTDHEKCYPC NADI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)