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AT4G23070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.876
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RHOMBOID-like protein 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RHOMBOID-like protein 7 (RBL7); FUNCTIONS IN: serine-type endopeptidase activity; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane; EXPRESSED IN: root, pollen tube; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: RHOMBOID-like protein 6 (TAIR:AT1G12750.3); Has 5309 Blast hits to 5308 proteins in 1628 species: Archae - 134; Bacteria - 3233; Metazoa - 520; Fungi - 126; Plants - 324; Viruses - 0; Other Eukaryotes - 972 (source: NCBI BLink).
Protein Annotations
EC:3.4.21.-eggNOG:COG0705eggNOG:KOG2289EMBL:AL031018
EMBL:AL161558EMBL:CP002687EnsemblPlants:AT4G23070EnsemblPlants:AT4G23070.1
entrez:828406Gene3D:1.20.1540.10GeneID:828406Genevisible:O82756
GO:GO:0004252GO:GO:0016021GO:GO:0016485Gramene:AT4G23070.1
hmmpanther:PTHR22936hmmpanther:PTHR22936:SF35HOGENOM:HOG000239666InParanoid:O82756
InterPro:IPR002610InterPro:IPR022764KEGG:ath:AT4G23070MEROPS:S54.A03
OMA:QFEWEENPANTHER:PTHR22936PaxDb:O82756Pfam:PF01694
PhylomeDB:O82756PIR:T05139PRO:PR:O82756ProteinModelPortal:O82756
Proteomes:UP000006548RefSeq:NP_194038.1STRING:3702.AT4G23070.1SUPFAM:SSF144091
TAIR:AT4G23070tair10-symbols:ATRBL7tair10-symbols:RBL7TMHMM:TMhelix
UniGene:At.54485UniProt:O82756
Coordinates (TAIR10) chr4:-:12090690..12092077
Molecular Weight (calculated) 34533.50 Da
IEP (calculated) 7.87
GRAVY (calculated) 0.49
Length 313 amino acids
Sequence (TAIR10)
(BLAST)
001: MLSTAAEEDP EGGSRETNNG GETTPDMQWR SWIIPIVVIA NVVVFVVVMY YNDCPHKSHR CLAKFLGRFS FESFKSNPLL GPSSSTLEKM GALAWGKIVH
101: KRQVWRLLTC MWLHAGVIHL LANMCCVAYI GVRLEQQFGF VRVGTIYLVS GFCGSILSCL FLEDAISVGA SSALFGLLGA MLSELLINWT TYDNKGVAIV
201: MLLVIVGVNL GLGTLPPVDN FAHIGGFFGG FLLGFLLLIH PQFEWEENQV SLMPGTIVKP KYNTCQLVLC IVASIVFVAG FTSGLVILFR GDSLNRYCKW
301: CHKLSYSSKS QWT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)