suba logo
AT4G22235.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Arabidopsis defensin-like protein
Curator
Summary (TAIR10)
Encodes a defensin-like (DEFL) family protein.
Computational
Description (TAIR10)
Arabidopsis defensin-like protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Defensin-like protein, Arabidopsis (InterPro:IPR022618), Low-molecular-weight cysteine-rich family (InterPro:IPR020191); BEST Arabidopsis thaliana protein match is: Arabidopsis defensin-like protein (TAIR:AT4G22230.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:13607EMBL:AL021712EMBL:AL161556EMBL:BT010916
EMBL:BT011583EMBL:CP002687EnsemblPlants:AT4G22235EnsemblPlants:AT4G22235.1
entrez:828318ExpressionAtlas:Q6NMS3GeneID:828318GO:GO:0005576
GO:GO:0031640GO:GO:0050832HOGENOM:HOG000113304IntAct:Q6NMS3
InterPro:IPR020191OMA:ICWCCRDPaxDb:Q6NMS3Pfam:PF10868
Pfam:Q6NMS3PhylomeDB:Q6NMS3PIR:T04904PRIDE:Q6NMS3
PRO:PR:Q6NMS3ProDom:PD032890ProteinModelPortal:Q6NMS3Proteomes:UP000006548
RefSeq:NP_567657.1TAIR:AT4G22235TMHMM:TMhelixUniGene:At.32555
UniProt:Q6NMS3
Coordinates (TAIR10) chr4:+:11763725..11764089
Molecular Weight (calculated) 9689.80 Da
IEP (calculated) 6.95
GRAVY (calculated) 0.17
Length 91 amino acids
Sequence (TAIR10)
(BLAST)
1: MGSLKLSTFA IVVCLSILLI SPIEVNGWGK CDLRKGLCRL ADTISTCDVP CRAVDSKYHG GECLNVGGGQ GICWCCRDYD AAKSGAEKES M
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)