AT4G19000.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Transcription elongation factor (TFIIS) family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
The C-terminal portion of this protein has homology to the C-termini of the IWS1 (Interacts With Spt6) proteins found in yeast and humans. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
IWS2; CONTAINS InterPro DOMAIN/s: Transcription factor IIS, N-terminal (InterPro:IPR017923); BEST Arabidopsis thaliana protein match is: Transcription elongation factor (TFIIS) family protein (TAIR:AT1G32130.2); Has 1027 Blast hits to 954 proteins in 257 species: Archae - 2; Bacteria - 95; Metazoa - 273; Fungi - 174; Plants - 74; Viruses - 5; Other Eukaryotes - 404 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:10405503..10407339 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 47097.40 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.96 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.96 | ||||||||||||||||||||||||||||||||||||
| Length | 406 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQELDSSNDE WVKELEGENE ESKFTGRRLV KKSISVPELV DEVEEDLDDF TEPADDFNDK VGKKRQRKKK DESGLEKTKK NKKQNSEEVQ EMWDSITNNT 101: NSQYGDKVVV KPPKKKDEDA EEIKKLFSLR KKKSKCDKTS MEIGMQVEQV MANLEIAVED DVICNREGKP AINKLMKLPL LNETLSKKPL QGEFLDHGVL 201: NLLKNWLEPL PDGSLPNINI RSAVLMILND FRIDLDQDSR REQLIKSGLG KVIMFLSKSD EETTPNRRLA NDIINKWGRI IYNKSTRYDN MFTQEELDEQ 301: RQILLRRQTK TAPKVSGTRA RDFNTDIDLY ELGTWTGRAR AKIPTTMSMD FKIRPPSKVD INQEEEPCSK WQMEKRHKNK QQKNIRKGGM QALKLSVDGR 401: TMLKYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)