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AT4G14103.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.946
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like superfamily protein (TAIR:AT4G14096.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:12345eggNOG:ENOG410JCUHeggNOG:ENOG410YZFHEMBL:AL161538
EMBL:AY133706EMBL:CP002687EMBL:Z97335EnsemblPlants:AT4G14103
EnsemblPlants:AT4G14103.1entrez:827048ExpressionAtlas:Q8L7H1Gene3D:3.80.10.10
GeneID:827048Genevisible:Q8L7H1hmmpanther:PTHR31639hmmpanther:PTHR31639:SF6
HOGENOM:HOG000015201InterPro:IPR001810InterPro:IPR013101InterPro:IPR032675
PaxDb:Q8L7H1Pfam:PF00646Pfam:PF07723Pfam:Q8L7H1
Pfscan:PS50181PhylomeDB:Q8L7H1PIR:B71402PRIDE:Q8L7H1
PRO:PR:Q8L7H1PROSITE:PS50181ProteinModelPortal:Q8L7H1Proteomes:UP000006548
RefSeq:NP_567422.1SMART:SM00256SMR:Q8L7H1STRING:3702.AT4G14103.2
SUPFAM:SSF52047SUPFAM:SSF81383TAIR:AT4G14103UniGene:At.33309
UniProt:Q8L7H1
Coordinates (TAIR10) chr4:+:8126948..8128305
Molecular Weight (calculated) 43236.30 Da
IEP (calculated) 5.41
GRAVY (calculated) 0.03
Length 381 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLSGSRDVI SSLPDDISSH ILSFLPTKEA ASTSVLSKKW RYLFAFVPNL DLDDSVYLNP ENETEISTSF MDFVDRVLAL QGNSPLHKFS LKIGDGIDPV
101: RIIPWINNVL ERGVSDLDLH LNLESEFLLP SQVYLCKTLV WLKLRFGLYP TIDVEDVHLP KLKTLYIEAT HFEEHGVGLT KLLSGCPMLE DLVLDDISWF
201: IWDFASVSVP TLKRLRFSWQ ERDEFPKSVL LDTPNLVYLK FTDTVAGKYP KVNLDSLVEA HIDLRLLKPL LINYHQGYGE NDMVGNATDF IMRICNVKTL
301: YLSANTLQVL TYSCDAIPIF NNLTHLTIES NPRVGWQSVP GLLKNSPNLE TLIFQGLIHK ATYRCGDVCL CKKPRKEILS C
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)