AT3G50940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.779 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: cytochrome BC1 synthesis (TAIR:AT3G50930.1); Has 22184 Blast hits to 20506 proteins in 2862 species: Archae - 1312; Bacteria - 7436; Metazoa - 3634; Fungi - 2857; Plants - 2601; Viruses - 34; Other Eukaryotes - 4310 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:18934086..18935528 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 51472.40 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.28 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 451 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSSSESHLA TAKTALTAVA SVAAAAILAR SVVQDYMPNE VHEYISHGFR RFFSYFSYQM TAVIEEFGGF EHNQVFEAAE AYLSTKISNS TRRIKVNKLE 101: KQSNYSVTVE RDEEVVDIFD GVKLSWILVC RHVDKKDFRN PRDLNSTLKS EVRSYELSFR KKFKNMVLES YLPFVVEQAA SIKQKFKTLK IFTVDSYSVE 201: WTSVTLDHPS TFRTLALDPE VKKNLVEDLD RFVQRKGFYG RVGKAWKRGY LLYGPPGTGK SSLIAAIANH LNFDIYDLDL TSLNNNAELR RLLMSTANRS 301: ILVVEDIDCS IELKDRSTDQ ENNDPLHKTV TLSGLLNFVD GLWSSCGNER IIVFTTNYRE KLDPALLRPG RMDMHIHMSY CTPAAFKVLA SNYLEIQDHI 401: LFEQIEEFIR EIEVTPAEVA EQLMRSDSVD KVLQGLVEFL KAKKQIDNSK A |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)