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AT3G27030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J3Z7eggNOG:ENOG410YMFWEMBL:CP002686EnsemblPlants:AT3G27030
EnsemblPlants:AT3G27030.1entrez:822321GeneID:822321GO:GO:0016021
Gramene:AT3G27030.1hmmpanther:PTHR33128hmmpanther:PTHR33128:SF13InterPro:IPR021775
KEGG:ath:AT3G27030OMA:ALQIHICPaxDb:F4JEW3Pfam:PF11820
PRIDE:F4JEW3ProteinModelPortal:F4JEW3Proteomes:UP000006548RefSeq:NP_189339.1
TAIR:AT3G27030TMHMM:TMhelixUniGene:At.37116UniProt:F4JEW3
Coordinates (TAIR10) chr3:-:9972508..9974225
Molecular Weight (calculated) 15382.50 Da
IEP (calculated) 8.25
GRAVY (calculated) 1.18
Length 142 amino acids
Sequence (TAIR10)
(BLAST)
001: MPDWGPVFVA VTLFVLLTPG LLIQVPGRGR VVEFGTFQTS GLSVIVHTLI YFTLVCILLL ALQIHICNLF STSMADWAPV LVGVVLFVIL SPGLLFSLPG
101: NNRTVDFGGL KTNGKAIAVH TLIFFAIYTI LILALNLHIY TG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)