AT3G27030.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:extracellular 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3339 (InterPro:IPR021775); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF 3339) (TAIR:AT5G40970.1); Has 538 Blast hits to 271 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 534; Viruses - 4; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr3:-:9972508..9974225 | ||||||||||||||||||||||||
Molecular Weight (calculated) | 15382.50 Da | ||||||||||||||||||||||||
IEP (calculated) | 8.25 | ||||||||||||||||||||||||
GRAVY (calculated) | 1.18 | ||||||||||||||||||||||||
Length | 142 amino acids | ||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MPDWGPVFVA VTLFVLLTPG LLIQVPGRGR VVEFGTFQTS GLSVIVHTLI YFTLVCILLL ALQIHICNLF STSMADWAPV LVGVVLFVIL SPGLLFSLPG 101: NNRTVDFGGL KTNGKAIAVH TLIFFAIYTI LILALNLHIY TG |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)