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AT3G25990.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Homeodomain-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), MYB-like (InterPro:IPR017877); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT1G13450.1); Has 917 Blast hits to 790 proteins in 65 species: Archae - 0; Bacteria - 0; Metazoa - 139; Fungi - 0; Plants - 777; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink).
Protein Annotations
BioGrid:7527DNASU:822196eggNOG:ENOG410YYXYeggNOG:KOG4282
EMBL:AB023041EMBL:AB072370EMBL:CP002686EnsemblPlants:AT3G25990
EnsemblPlants:AT3G25990.1entrez:822196Gene3D:1.10.10.60GeneID:822196
Genevisible:Q9LU92GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355Gramene:AT3G25990.1hmmpanther:PTHR10032
hmmpanther:PTHR10032:SF222HOGENOM:HOG000064692InParanoid:Q9LU92InterPro:IPR001005
InterPro:IPR009057InterPro:IPR017877InterPro:IPR027775KEGG:ath:AT3G25990
OMA:ETWAQDEPANTHER:PTHR10032PaxDb:Q9LU92Pfam:PF13837
Pfam:Q9LU92Pfscan:PS50090PhylomeDB:Q9LU92PRIDE:Q9LU92
PRO:PR:Q9LU92PROSITE:PS50090ProteinModelPortal:Q9LU92Proteomes:UP000006548
RefSeq:NP_189228.1SMART:SM00717SMR:Q9LU92STRING:3702.AT3G25990.1
TAIR:AT3G25990UniGene:At.23470UniGene:At.37291UniProt:Q9LU92
Coordinates (TAIR10) chr3:-:9504846..9506703
Molecular Weight (calculated) 42785.20 Da
IEP (calculated) 5.76
GRAVY (calculated) -0.80
Length 372 amino acids
Sequence (TAIR10)
(BLAST)
001: MFVSDNNNPS RDINMMIGDV TSNGDLQPHQ IILGESSGGE DHEIIKAPKK RAETWAQDET RTLISLRREM DNLFNTSKSN KHLWEQISKK MREKGFDRSP
101: SMCTDKWRNI LKEFKKAKQH EDKATSGGST KMSYYNEIED IFRERKKKVA FYKSPATTTP SSAKVDSFMQ FTDKGFEDTG ISFTSVEANG RPTLNLETEL
201: DHDGLPLPIA ADPITANGVP PWNWRDTPGN GVDGQPFAGR IITVKFGDYT RRVGIDGTAE AIKEAIRSAF RLRTRRAFWL EDEEQVIRSL DRDMPLGNYI
301: LRIDEGIAVR VCHYDESDPL PVHQEEKIFY TEEDYRDFLA RRGWTCLREF DAFQNIDNMD ELQSGRLYRG MR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)