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AT3G24690.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
BEST Arabidopsis thaliana protein match is: glycine-rich protein (TAIR:AT1G27090.1); Has 51 Blast hits to 50 proteins in 15 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 47; Viruses - 0; Other Eukaryotes - 2 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JUD3eggNOG:ENOG41106ZNEMBL:AP000740EMBL:CP002686
EnsemblPlants:AT3G24690EnsemblPlants:AT3G24690.1entrez:822066GeneID:822066
Gramene:AT3G24690.1hmmpanther:PTHR37736hmmpanther:PTHR37736:SF1HOGENOM:HOG000153026
IntAct:Q9LJ40KEGG:ath:AT3G24690ncoils:CoilOMA:KYNRITD
PhylomeDB:Q9LJ40Proteomes:UP000006548RefSeq:NP_189112.1TAIR:AT3G24690
UniGene:At.50224UniProt:Q9LJ40
Coordinates (TAIR10) chr3:+:9020738..9021290
Molecular Weight (calculated) 17504.70 Da
IEP (calculated) 10.15
GRAVY (calculated) -0.97
Length 158 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAVEGQISA LISKRLRTLR KKYNRITDME ESISQGKTLN KEQEDTLRSK PIVSALIDEL VKLRIPPPSA AISEETSPPA KNKKQQKLSH ARKEVAEEEN
101: VTAKTDIEDC KISDDGINSE VSKDDTSPSS ESSQGVTPSP LSRKARRKRN AKKPQIPQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)