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AT3G21840.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.994
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : SKP1-like 7
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
SKP1-like 7 (SK7); CONTAINS InterPro DOMAIN/s: E3 ubiquitin ligase, SCF complex, Skp subunit (InterPro:IPR016897), SKP1 component, dimerisation (InterPro:IPR016072), SKP1 component (InterPro:IPR001232), BTB/POZ fold (InterPro:IPR011333), SKP1 component, POZ (InterPro:IPR016073); BEST Arabidopsis thaliana protein match is: SKP1-like 8 (TAIR:AT3G21830.1); Has 1302 Blast hits to 1298 proteins in 257 species: Archae - 0; Bacteria - 0; Metazoa - 505; Fungi - 171; Plants - 493; Viruses - 7; Other Eukaryotes - 126 (source: NCBI BLink).
Protein Annotations
BioGrid:7070eggNOG:COG5201eggNOG:KOG1724EMBL:AB025634
EMBL:BX841469EMBL:CP002686EnsemblPlants:AT3G21840EnsemblPlants:AT3G21840.1
entrez:821738GeneID:821738Genevisible:Q9LSY0GO:GO:0005634
GO:GO:0006511GO:GO:0016567GO:GO:0019005Gramene:AT3G21840.1
hmmpanther:PTHR11165HOGENOM:HOG000172184IntAct:Q9LSY0InterPro:IPR001232
InterPro:IPR011333InterPro:IPR016072InterPro:IPR016073InterPro:IPR016897
iPTMnet:Q9LSY0KEGG:ath:AT3G21840KO:K03094OMA:FELINAV
PaxDb:Q9LSY0Pfam:PF01466Pfam:PF03931Pfam:Q9LSY0
PhylomeDB:Q9LSY0PIRSF:PIRSF028729PRO:PR:Q9LSY0ProteinModelPortal:Q9LSY0
Proteomes:UP000006548RefSeq:NP_566693.1SMART:SM00512SMR:Q9LSY0
STRING:3702.AT3G21840.1SUPFAM:SSF54695SUPFAM:SSF81382TAIR:AT3G21840
tair10-symbols:ASK7tair10-symbols:SK7UniGene:At.70383UniPathway:UPA00143
UniProt:Q9LSY0
Coordinates (TAIR10) chr3:-:7695490..7695867
Molecular Weight (calculated) 14455.20 Da
IEP (calculated) 4.48
GRAVY (calculated) -0.38
Length 125 amino acids
Sequence (TAIR10)
(BLAST)
001: MSTKKIMLKS SDGKMFEIEE ETARQCQTIA HMIEAECTDN VIPVSNVTSE ILEMVIEYCN KHHVDAANPC SDEDLKKWDK EFMEKDQYTI FHLMNAAYDL
101: HIKSLLALAY QTVADMVNDN KWAFE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)