suba logo
AT3G18360.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 0.999
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : VQ motif-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
VQ motif-containing protein; CONTAINS InterPro DOMAIN/s: VQ (InterPro:IPR008889); BEST Arabidopsis thaliana protein match is: VQ motif-containing protein (TAIR:AT1G68450.1); Has 752 Blast hits to 743 proteins in 135 species: Archae - 2; Bacteria - 26; Metazoa - 338; Fungi - 62; Plants - 207; Viruses - 16; Other Eukaryotes - 101 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J87ReggNOG:ENOG410Z9YDEMBL:AB026658EMBL:BT012192
EMBL:CP002686EnsemblPlants:AT3G18360EnsemblPlants:AT3G18360.1entrez:821365
GeneID:821365Genevisible:Q9LS54GO:GO:0005634GO:GO:0006952
Gramene:AT3G18360.1hmmpanther:PTHR33143hmmpanther:PTHR33143:SF4HOGENOM:HOG000091071
IntAct:Q9LS54InterPro:IPR008889KEGG:ath:AT3G18360OMA:NFLCGNQ
PaxDb:Q9LS54Pfam:PF05678Pfam:Q9LS54PhylomeDB:Q9LS54
PRIDE:Q9LS54PRO:PR:Q9LS54ProteinModelPortal:Q9LS54Proteomes:UP000006548
RefSeq:NP_188465.1STRING:3702.AT3G18360.1TAIR:AT3G18360UniGene:At.49613
UniProt:Q9LS54
Coordinates (TAIR10) chr3:-:6300827..6301684
Molecular Weight (calculated) 31114.10 Da
IEP (calculated) 7.33
GRAVY (calculated) -0.76
Length 285 amino acids
Sequence (TAIR10)
(BLAST)
001: MSSTYKDNHP YHHHPHHHHH HPKREPNENN SGILYTPSPS PSPPTLKVNK DSHVIKKPPS PSSFSSAAKP RHPVIIYTHT PRIIHTNPKD FMALVQKLTG
101: MTHSDEDLGG GNAMTDPGVV KSINRTVSEP TVDRKNNRNR CGGGNNYLRN YSGAGNGKGI FFNNTMISED SESSSVITTE ENIGEHGQVN SSLPYSAVAI
201: PPQPPPHPPP PPPPPSMYDA AGINYGAYLP TFPIFPPANP ADNFLCGNQP FANFDDPLFF APNMRSSFSS SSSSGFDGLT EFRDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)