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AT3G14710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.844
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : RNI-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD (InterPro:IPR013596), FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT3G52680.2); Has 1267 Blast hits to 1249 proteins in 21 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1267; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:6033eggNOG:ENOG410JEMZeggNOG:ENOG410ZUGMEMBL:AB023038
EMBL:BT015055EMBL:BT020252EMBL:CP002686EnsemblPlants:AT3G14710
EnsemblPlants:AT3G14710.1entrez:820699Gene3D:3.80.10.10GeneID:820699
Genevisible:Q9LUC4Gramene:AT3G14710.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126
HOGENOM:HOG000112538InParanoid:Q9LUC4InterPro:IPR001810InterPro:IPR006566
InterPro:IPR032675KEGG:ath:AT3G14710OMA:SENFEDKPaxDb:Q9LUC4
Pfam:PF00646Pfam:PF08387Pfam:Q9LUC4PhylomeDB:Q9LUC4
PRIDE:Q9LUC4PRO:PR:Q9LUC4ProteinModelPortal:Q9LUC4Proteomes:UP000006548
RefSeq:NP_188089.1SMART:SM00579SMR:Q9LUC4SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT3G14710UniGene:At.39184UniProt:Q9LUC4
Coordinates (TAIR10) chr3:+:4941545..4943055
Molecular Weight (calculated) 50148.00 Da
IEP (calculated) 8.06
GRAVY (calculated) 0.07
Length 442 amino acids
Sequence (TAIR10)
(BLAST)
001: MHPETEQACL VPSSKKTKLC SENFEDKFSS LLESVVSIIL SQLPTAEAVS TSVLSKSWKN IWTNITDLHF DDTKQRDPSD SRFTDFVERV VGDIGSPHIS
101: SFYLCSVNTF DETLLFSWLS KVLKRNLQRL VVTCNDLEII SFSSLFPSFV SLVELRLRTK SILDISAPAI LPNLKFLSLE DARIFNMSSV SKNLVLNFPV
201: LETFEASYCR CFRTDTVIID SPLLRIFEMF KCTSEHVPNP SQVCKIRVLA SKLEKITFCG DEPRKIHLSF PPSLPDAYLA LSRSEWPKTF LRSFTCVTSL
301: ALVLSKDFHV MAVPKFSQLV YLHLIYDMTQ HFRLMQFLKS APILEMLSIR DLTSPRSTPT AKSLKELRSV ESPDCVTTML KVLQIRNFKP NRLQISVLRY
401: VLDNAEILGS VILSSPNPIT EEEKARILAF PKASPHASVL FE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)