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AT3G12470.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 0.867
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: sperm cell, seed; EXPRESSED DURING: E expanded cotyledon stage; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT3G12410.1); Has 210 Blast hits to 197 proteins in 17 species: Archae - 0; Bacteria - 0; Metazoa - 3; Fungi - 0; Plants - 207; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS63eggNOG:KOG4373EMBL:AC069474EMBL:AP002047
EMBL:BT025648EMBL:CP002686EnsemblPlants:AT3G12470EnsemblPlants:AT3G12470.1
entrez:820426Gene3D:3.30.420.10GeneID:820426GO:GO:0003676
GO:GO:0016740Gramene:AT3G12470.1hmmpanther:PTHR13620hmmpanther:PTHR13620:SF8
IntAct:Q9LHG1InterPro:IPR012337KEGG:ath:AT3G12470OMA:FRTHQKH
PhylomeDB:Q9LHG1Proteomes:UP000006548RefSeq:NP_566424.1STRING:3702.AT3G12470.1
SUPFAM:SSF53098TAIR:AT3G12470UniGene:At.39591UniProt:Q9LHG1
Coordinates (TAIR10) chr3:-:3956123..3956785
Molecular Weight (calculated) 25358.10 Da
IEP (calculated) 10.24
GRAVY (calculated) -0.13
Length 220 amino acids
Sequence (TAIR10)
(BLAST)
001: MAPTIKRIRS FRTHQKHFVD FFGDDLIVTV TPTASVIRRW IRSVRSYNRN HSVHPLVVGI GVQWRPDSSD PDPPPKTLQL CVGSRCLIIQ LGYNYGLPKV
101: LRTFLADPKT TFVGVWNGQD QKKLEKCRHR VEIGKLLDIR MFVRDSRGAR MCFCSFEQIV KERLGRVGVR LDPAICMSDW GVYNLNHYQV LQASIESYVC
201: FKLAVEERLW NLKVAANLVI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)