AT3G02400.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 ASURE: nucleus What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : SMAD/FHA domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
SMAD/FHA domain-containing protein ; FUNCTIONS IN: DNA binding; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: nucleus; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: AT hook, DNA-binding motif (InterPro:IPR017956), SMAD/FHA domain (InterPro:IPR008984), Forkhead-associated (FHA) domain (InterPro:IPR000253); BEST Arabidopsis thaliana protein match is: SMAD/FHA domain-containing protein (TAIR:AT4G14490.1); Has 35808 Blast hits to 23469 proteins in 1463 species: Archae - 220; Bacteria - 3517; Metazoa - 15859; Fungi - 2964; Plants - 1604; Viruses - 219; Other Eukaryotes - 11425 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr3:+:489830..491587 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 66391.20 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.81 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -1.17 | ||||||||||||||||||||||||||||||||
| Length | 585 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVPPLLKLDF TQGPRAGDSL GFKPGSTIRI GRIVRGNEIA IKDAGISTKH LRIVSDSENW IIHDLGSSNG TILNSDTIDS DTPVNLSHGD EIKLGEYTSI 101: LVNFGSDVVQ APQEHKLPPR PRRNNKRLAA SDPDPDPIES VQEKPKRTRG SSKQEENELP KSTRASRKKN LDDIADKEEE LDVEIEKVVK ARVGRPRKNA 201: GSAIAKEEEV VEEKKRVGRP RKNASSAITE EEEVVEEKKG NSRARRGKNS EIVQKSIKLE VEDTPKAVEI SEVKSRKRVT RSKQIENECF GLEVKDEKRT 301: TRSTRSKTTE IGGESFLELE MVLNQARKSR AKRKKMDEEP SKETRNDDAG EEVLKNCHVE EDKENEAQEG CSGRSDDICD QEDEKECDGS KRVEQVEIEL 401: RKKSTVEGLK CTDKEDGETE NSQDIERERE NENEKEAQEG CSERSDKEYE RVGGGAKRVE QVEIELRKKS TVGEDDLNCT VREDGETENL QEIEEECHDE 501: ESDCKVEEAG FATLDEEKVG QGWNNKKVER VEVYLEKMKL REWFDAIEVQ LPKQTIEETE KMIEPMRSKS MRVHKHIAEQ KEKGD |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)