AT2G27610.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.824 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Tetratricopeptide repeat (TPR)-like superfamily protein; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT4G13650.1); Has 54594 Blast hits to 14874 proteins in 305 species: Archae - 2; Bacteria - 30; Metazoa - 158; Fungi - 263; Plants - 53396; Viruses - 0; Other Eukaryotes - 745 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr2:-:11783927..11786533 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 97190.60 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.68 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 868 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRFTTTIWRP PSLENFKPKF RIYANGVAQV RIYCFGTVSS SRLYNAHNLF DKSPGRDRES YISLLFGFSR DGRTQEAKRL FLNIHRLGME MDCSIFSSVL 101: KVSATLCDEL FGRQLHCQCI KFGFLDDVSV GTSLVDTYMK GSNFKDGRKV FDEMKERNVV TWTTLISGYA RNSMNDEVLT LFMRMQNEGT QPNSFTFAAA 201: LGVLAEEGVG GRGLQVHTVV VKNGLDKTIP VSNSLINLYL KCGNVRKARI LFDKTEVKSV VTWNSMISGY AANGLDLEAL GMFYSMRLNY VRLSESSFAS 301: VIKLCANLKE LRFTEQLHCS VVKYGFLFDQ NIRTALMVAY SKCTAMLDAL RLFKEIGCVG NVVSWTAMIS GFLQNDGKEE AVDLFSEMKR KGVRPNEFTY 401: SVILTALPVI SPSEVHAQVV KTNYERSSTV GTALLDAYVK LGKVEEAAKV FSGIDDKDIV AWSAMLAGYA QTGETEAAIK MFGELTKGGI KPNEFTFSSI 501: LNVCAATNAS MGQGKQFHGF AIKSRLDSSL CVSSALLTMY AKKGNIESAE EVFKRQREKD LVSWNSMISG YAQHGQAMKA LDVFKEMKKR KVKMDGVTFI 601: GVFAACTHAG LVEEGEKYFD IMVRDCKIAP TKEHNSCMVD LYSRAGQLEK AMKVIENMPN PAGSTIWRTI LAACRVHKKT ELGRLAAEKI IAMKPEDSAA 701: YVLLSNMYAE SGDWQERAKV RKLMNERNVK KEPGYSWIEV KNKTYSFLAG DRSHPLKDQI YMKLEDLSTR LKDLGYEPDT SYVLQDIDDE HKEAVLAQHS 801: ERLAIAFGLI ATPKGSPLLI IKNLRVCGDC HLVIKLIAKI EEREIVVRDS NRFHHFSSDG VCSCGDFW |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)