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AT2G25820.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Integrase-type DNA-binding superfamily protein
Curator
Summary (TAIR10)
encodes a member of the DREB subfamily A-4 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 17 members in this subfamily including TINY.
Computational
Description (TAIR10)
Integrase-type DNA-binding superfamily protein; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; EXPRESSED IN: sepal, root, seed, stamen; CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: Integrase-type DNA-binding superfamily protein (TAIR:AT4G32800.1); Has 5828 Blast hits to 5681 proteins in 265 species: Archae - 0; Bacteria - 5; Metazoa - 20; Fungi - 4; Plants - 5778; Viruses - 0; Other Eukaryotes - 21 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JVDAeggNOG:ENOG411060NEMBL:AC005395EMBL:AF370341
EMBL:AY063000EMBL:AY560870EMBL:AY600555EMBL:AY924749
EMBL:AY974198EMBL:CP002685EnsemblPlants:AT2G25820EnsemblPlants:AT2G25820.1
entrez:817124Gene3D:3.30.730.10GeneID:817124Genevisible:Q52QU1
GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0009873Gramene:AT2G25820.1hmmpanther:PTHR31985hmmpanther:PTHR31985:SF27
HOGENOM:HOG000237624InParanoid:Q52QU1InterPro:IPR001471InterPro:IPR016177
KEGG:ath:AT2G25820OMA:TRCDTEKPaxDb:Q52QU1Pfam:PF00847
Pfam:Q52QU1Pfscan:PS51032PhylomeDB:Q52QU1PIR:B84653
PRINTS:PR00367PRO:PR:Q52QU1PROSITE:PS51032ProteinModelPortal:Q52QU1
Proteomes:UP000006548RefSeq:NP_565609.3SMART:SM00380SMR:Q52QU1
SUPFAM:SSF54171TAIR:AT2G25820UniGene:At.13046UniProt:Q52QU1
Coordinates (TAIR10) chr2:+:11014986..11015663
Molecular Weight (calculated) 24866.00 Da
IEP (calculated) 4.77
GRAVY (calculated) -0.51
Length 225 amino acids
Sequence (TAIR10)
(BLAST)
001: MVDSHGSDTE CSSKKKKEKT KEKGVYRGAR MRSWGKWVSE IREPRKKSRI WLGTFPTAEM AARAHDVAAL SIKGSSAILN FPELADFLPR PVSLSQQDIQ
101: AAAAEAALMD FKTVPFHLQD DSTPLQTRCD TEKIEKWSSS SSSASSSSSS SSSSSSSMLS GELGDIVELP SLENNVKYDC ALYDSLEGLV SMPPWLDATE
201: NDFRYGDDSV LLDPCLKESF LWNYE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)