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AT2G20825.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Developmental regulator, ULTRAPETALA
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ULTRAPETALA 2 (ULT2); FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cytosol, nucleus; EXPRESSED IN: 7 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Developmental regulator, ULTRAPETALA (InterPro:IPR020533), SAND domain (InterPro:IPR000770); BEST Arabidopsis thaliana protein match is: Developmental regulator, ULTRAPETALA (TAIR:AT4G28190.1); Has 46 Blast hits to 46 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 46; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:1967eggNOG:ENOG410IJ32eggNOG:ENOG410YE1GEMBL:AC006234
EMBL:AY219049EMBL:AY954793EMBL:CP002685EnsemblPlants:AT2G20825
EnsemblPlants:AT2G20825.1entrez:816614GeneID:816614GO:GO:0003677
GO:GO:0005634GO:GO:0005829GO:GO:0006351GO:GO:0006355
GO:GO:0007275Gramene:AT2G20825.1hmmpanther:PTHR34053hmmpanther:PTHR34053:SF1
HOGENOM:HOG000272671InParanoid:Q8S8I2InterPro:IPR000770InterPro:IPR020533
KEGG:ath:AT2G20825OMA:MERECGSPaxDb:Q8S8I2Pfam:Q8S8I2
Pfscan:PS50864PhylomeDB:Q8S8I2PRIDE:Q8S8I2PRO:PR:Q8S8I2
ProDom:PD317854PROSITE:PS50864ProteinModelPortal:Q8S8I2Proteomes:UP000006548
RefSeq:NP_179677.1STRING:3702.AT2G20825.1TAIR:AT2G20825tair10-symbols:ULT2
UniGene:At.39641UniProt:Q8S8I2
Coordinates (TAIR10) chr2:-:8965845..8966795
Molecular Weight (calculated) 26099.00 Da
IEP (calculated) 7.58
GRAVY (calculated) -0.60
Length 228 amino acids
Sequence (TAIR10)
(BLAST)
001: MERECGSKEL FSKEELQEIS GVHVGDDYVE VMCGCTSHRY GDAVARLKIF SDGELQITCQ CTPACLEDKL TPAAFEKHSE RETSRNWRNN VWVFIEGDKV
101: PLSKTVLLRY YNKALKNSNV SKVIHRDEFV GCSTCGKERR FRLRSRGECR MHHDAIAEPN WKCCDYPYDK ITCEEEEERG SRKVFRGCTR SPSCKGCTSC
201: VCFGCKLCRF SDCNCQTCLD FTTNAKPI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)