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AT2G19570.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.950
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : cytidine deaminase 1
Curator
Summary (TAIR10)
Encodes a cytidine deaminase that deaminates cytidine and deoxycytidine and is competitively inhibited by cytosine-containing compounds.
Computational
Description (TAIR10)
cytidine deaminase 1 (CDA1); CONTAINS InterPro DOMAIN/s: Cytidine deaminase, homodimeric (InterPro:IPR006263), APOBEC/CMP deaminase, zinc-binding (InterPro:IPR016192), CMP/dCMP deaminase, zinc-binding (InterPro:IPR002125), Cytidine deaminase-like (InterPro:IPR016193), Cytidine/deoxycytidylate deaminase, zinc-binding domain (InterPro:IPR013171); BEST Arabidopsis thaliana protein match is: Cytidine/deoxycytidylate deaminase family protein (TAIR:AT4G29610.1); Has 2638 Blast hits to 2526 proteins in 1057 species: Archae - 42; Bacteria - 2022; Metazoa - 110; Fungi - 58; Plants - 130; Viruses - 0; Other Eukaryotes - 276 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G19570-MONOMERBioCyc:MetaCyc:AT2G19570-MONOMEREC:3.5.4.5eggNOG:COG0295
eggNOG:KOG0833EMBL:AC005917EMBL:AF121878EMBL:AF134487
EMBL:AJ005261EMBL:AJ005687EMBL:AY085453EMBL:AY128366
EMBL:BT008708EMBL:CP002685EnsemblPlants:AT2G19570EnsemblPlants:AT2G19570.1
entrez:816476GeneID:816476Genevisible:O65896GO:GO:0004126
GO:GO:0005829GO:GO:0008270GO:GO:0009972GO:GO:0042803
Gramene:AT2G19570.1gramene_pathway:3.5.4.5gramene_pathway:PWY-6556hmmpanther:PTHR11644
hmmpanther:PTHR11644:SF2HOGENOM:HOG000218616InParanoid:O65896IntAct:O65896
InterPro:IPR002125InterPro:IPR006263InterPro:IPR013171InterPro:IPR016192
InterPro:IPR016193KEGG:00240+3.5.4.5KEGG:00983+3.5.4.5KEGG:ath:AT2G19570
KO:K01489OMA:HAPYSECPaxDb:O65896Pfam:O65896
Pfam:PF00383Pfam:PF08211Pfscan:PS51747PhylomeDB:O65896
PIR:T51733PIRSF:PIRSF006334PRIDE:O65896PRO:PR:O65896
PROSITE:PS00903PROSITE:PS51747ProteinModelPortal:O65896Proteomes:UP000006548
RefSeq:NP_179547.1scanprosite:PS00903SMR:O65896STRING:3702.AT2G19570.1
SUPFAM:SSF53927TAIR:AT2G19570tair10-symbols:AT-CDA1tair10-symbols:CDA1
tair10-symbols:DESZTIGRfam:TIGR01355TIGRFAMs:TIGR01355UniGene:At.25410
UniGene:At.69521UniProt:O65896
Coordinates (TAIR10) chr2:-:8470598..8471503
Molecular Weight (calculated) 32583.60 Da
IEP (calculated) 5.74
GRAVY (calculated) -0.10
Length 301 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKPSFVIQS KEAESAAKQL GVSVIQLLPS LVKPAQSYAR TPISKFNVAV VGLGSSGRIF LGVNVEFPNL PLHHSIHAEQ FLVTNLTLNG ERHLNFFAVS
101: AAPCGHCRQF LQEIRDAPEI KILITDPNNS ADSDSAADSD GFLRLGSFLP HRFGPDDLLG KDHPLLLESH DNHLKISDLD SICNGNTDSS ADLKQTALAA
201: ANRSYAPYSL CPSGVSLVDC DGKVYRGWYM ESAAYNPSMG PVQAALVDYV ANGGGGGYER IVGAVLVEKE DAVVRQEHTA RLLLETISPK CEFKVFHCYE
301: A
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)