suba logo
AT2G02400.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
plasma membrane 0.650
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30394608 (2019): plastid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:15060130 (2004): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: coenzyme binding, binding, cinnamoyl-CoA reductase activity, catalytic activity; INVOLVED IN: lignin biosynthetic process, cellular metabolic process, metabolic process; LOCATED IN: plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: NAD-dependent epimerase/dehydratase (InterPro:IPR001509), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT5G58490.1); Has 17462 Blast hits to 17447 proteins in 2524 species: Archae - 423; Bacteria - 8786; Metazoa - 654; Fungi - 1071; Plants - 2738; Viruses - 70; Other Eukaryotes - 3720 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT2G02400-MONOMERDNASU:814771eggNOG:COG0451eggNOG:KOG1502
EMBL:AC005312EMBL:AK228447EMBL:BT005781EMBL:BT006079
EMBL:CP002685EnsemblPlants:AT2G02400EnsemblPlants:AT2G02400.1entrez:814771
Gene3D:3.40.50.720GeneID:814771GO:GO:0003824GO:GO:0005886
GO:GO:0050662Gramene:AT2G02400.1hmmpanther:PTHR10366hmmpanther:PTHR10366:SF295
HOGENOM:HOG000167998InterPro:IPR001509InterPro:IPR016040KEGG:ath:AT2G02400
OMA:QEHHWLGPfam:PF01370PhylomeDB:Q9ZVQ2PIR:C84436
Proteomes:UP000006548RefSeq:NP_178345.1SMR:Q9ZVQ2STRING:3702.AT2G02400.1
SUPFAM:SSF51735TAIR:AT2G02400UniGene:At.41493UniGene:At.69541
UniProt:Q9ZVQ2
Coordinates (TAIR10) chr2:-:631413..632449
Molecular Weight (calculated) 34841.70 Da
IEP (calculated) 6.18
GRAVY (calculated) -0.05
Length 318 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKETVCVTG ANGFIGSWII RTLIEKGYTK IHASIYPGSD PTHLLQLPGS DSKIKIFEAD LLDSDAISRA IDGCAGVFHV ASPCTLDPPV DPEKELVEPA
101: VKGTINVLEA AKRFNVRRVV ITSSISALVP NPNWPEKVPV DESSWSDLDF CKSRQKWYPI SKTLAEKAAW EFSEKHGTNI VTIHPSTCLG PLLQPNLNAS
201: CAVLLQLLQG STETQEHHWL GVVHVKDVAK GHVMLFETPD ASGRFLCTNG IYQFSEFAAL VSKLFPEFAV HKFDKETQPG LTSCNDAAKR LIELGLVFTA
301: VEDAVKETVQ SLRDKGFL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)