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AT1G79580.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Curator
Summary (TAIR10)
NAC-domain protein. Involved in root cap development. Involved in a regulatory feedback loop with FEZ. FEZ activates SMB in hte root cap daughter cells soon after division, and SMB in turn represses FEZ expression in these cells, thereby preventing further stem cell divisions.
Computational
Description (TAIR10)
SOMBRERO (SMB); CONTAINS InterPro DOMAIN/s: No apical meristem (NAM) protein (InterPro:IPR003441); BEST Arabidopsis thaliana protein match is: NAC domain containing protein 70 (TAIR:AT4G10350.1); Has 5042 Blast hits to 4339 proteins in 312 species: Archae - 0; Bacteria - 299; Metazoa - 1017; Fungi - 76; Plants - 3059; Viruses - 0; Other Eukaryotes - 591 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IHYVeggNOG:ENOG410YDYBEMBL:AC010793EMBL:BX816756
EMBL:CP002684EnsemblPlants:AT1G79580EnsemblPlants:AT1G79580.1EnsemblPlants:AT1G79580.2
EnsemblPlants:AT1G79580.3entrez:844296GeneID:844296Genevisible:Q9MA17
GO:GO:0003002GO:GO:0003677GO:GO:0003700GO:GO:0005634
GO:GO:0006351GO:GO:0006355GO:GO:0009834GO:GO:0010455
GO:GO:0048829Gramene:AT1G79580.1Gramene:AT1G79580.2Gramene:AT1G79580.3
hmmpanther:PTHR31989hmmpanther:PTHR31989:SF48HOGENOM:HOG000237406InParanoid:Q9MA17
InterPro:IPR003441KEGG:ath:AT1G79580OMA:NQRFPFHPaxDb:Q9MA17
Pfam:PF02365Pfam:Q9MA17Pfscan:PS51005PhylomeDB:Q9MA17
PRIDE:Q9MA17PRO:PR:Q9MA17PROSITE:PS51005ProteinModelPortal:Q9MA17
Proteomes:UP000006548RefSeq:NP_178076.1RefSeq:NP_974178.1RefSeq:NP_974179.1
SMR:Q9MA17STRING:3702.AT1G79580.1SUPFAM:SSF101941TAIR:AT1G79580
tair10-symbols:ANAC033tair10-symbols:SMBUniGene:At.50052UniProt:Q9MA17
Coordinates (TAIR10) chr1:-:29941020..29942925
Molecular Weight (calculated) 42384.10 Da
IEP (calculated) 7.22
GRAVY (calculated) -0.91
Length 371 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIGSSSTVA GGGQLSVPPG FRFHPTEEEL LYYYLKKKVS YEPIDLDVIR EVDLNKLEPW ELKEKCRIGS GPQNEWYFFS HKDKKYPTGT RTNRATAAGF
101: WKATGRDKSI HLNSSKKIGL RKTLVFYTGR APHGQKTEWI MHEYRLDDSE NEIQEDGWVV CRVFKKKNHF RGFHQEQEQD HHHHHQYIST NNDHDHHHHI
201: DSNSNNHSPL ILHPLDHHHH HHHIGRQIHM PLHEFANTLS HGSMHLPQLF SPDSAAAAAA AAASAQPFVS PINTTDIECS QNLLRLTSNN NYGGDWSFLD
301: KLLTTGNMNQ QQQQQVQNHQ AKCFGDLSNN DNNDQADHLG NNNGGSSSSP VNQRFPFHYL GNDANLLKFP K
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)