AT1G77730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pleckstrin homology (PH) domain superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pleckstrin homology (PH) domain superfamily protein; FUNCTIONS IN: phosphoinositide binding; INVOLVED IN: signal transduction; LOCATED IN: chloroplast; EXPRESSED IN: leaf whorl, sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Pleckstrin homology-type (InterPro:IPR011993), Oxysterol-binding protein (InterPro:IPR000648), Pleckstrin homology (InterPro:IPR001849); BEST Arabidopsis thaliana protein match is: OSBP(oxysterol binding protein)-related protein 1C (TAIR:AT4G08180.3); Has 729 Blast hits to 728 proteins in 131 species: Archae - 0; Bacteria - 0; Metazoa - 485; Fungi - 91; Plants - 115; Viruses - 0; Other Eukaryotes - 38 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:29214445..29215564 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 29891.50 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.17 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.60 | ||||||||||||||||||||||||||||||||||||
| Length | 265 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSSPLAAKSN LTTTRSASLN IPHSTRTNHN HDLRYSLSAG PRTNEDRPAS GNGVAGILYK WVNYGQGWKR RWFVLQDGVL SYYRIHGPDK ISLSVEMDRR 101: SKLIGGESLR FICRHSKRGD VHSPGKPLGQ IHLKVSSIGQ SISDGKRFTV FTGTKSLHLR AATSEDRASW IEALKAVKET FPRMSNEELM ASTTNVSVST 201: DKLRQRLMEE EVDETIIKDC EDIMKNNFLA LHDEVMSLKR YQYHLIDSLK NVSNSPIRPS NQSFS |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)