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AT1G70600.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:30447334 (2019): plasma membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22318864 (2012): plasma membrane
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Ribosomal protein L18e/L15 superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Ribosomal protein L18e/L15 superfamily protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translation; LOCATED IN: cytosolic ribosome, ribosome, cytosolic large ribosomal subunit, membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Ribosomal protein L18e/L15 (InterPro:IPR021131), Ribosomal protein L15, conserved site (InterPro:IPR001196); BEST Arabidopsis thaliana protein match is: Ribosomal protein L18e/L15 superfamily protein (TAIR:AT1G23290.1); Has 1077 Blast hits to 1077 proteins in 419 species: Archae - 174; Bacteria - 17; Metazoa - 357; Fungi - 165; Plants - 139; Viruses - 0; Other Eukaryotes - 225 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0200eggNOG:KOG1742EMBL:AC010796EnsemblPlants:AT1G70600
EnsemblPlants:AT1G70600.1entrez:843397ExpressionAtlas:Q7G923GeneID:843397
GO:GO:0003735GO:GO:0006412GO:GO:0015934Gramene:AT1G70600.1
HAMAP:MF_01341hmmpanther:PTHR11721hmmpanther:PTHR11721:SF6InterPro:IPR001196
InterPro:IPR021131InterPro:IPR030878KEGG:ath:AT1G70600KO:K02900
OMA:IAGKHRKPaxDb:Q7G923Pfam:P49637Pfam:PF00828
PhylomeDB:Q7G923PRIDE:Q7G923PROSITE:PS00475ProteinModelPortal:Q7G923
RefSeq:NP_177217.1scanprosite:PS00475SMR:Q7G923STRING:3702.AT1G70600.1
SUPFAM:SSF52080TAIR:AT1G70600UniGene:At.24536UniGene:At.72396
UniProt:P49637UniProt:Q7G923
Coordinates (TAIR10) chr1:-:26621168..26621608
Molecular Weight (calculated) 16456.40 Da
IEP (calculated) 11.32
GRAVY (calculated) -0.61
Length 146 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTRFKKNRK KRGHVSAGHG RIGKHRKHPG GRGNAGGMHH HRILFDKYHP GYFGKVGMRY FHKLRNKFFC PIVNLDKLWS LVPEDVKAKS TKDNVPLIDV
101: TQHGFFKVLG KGHLPENKPF VVKAKLISKT AEKKIKEAGG AVVLTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)