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AT1G68030.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : RING/FYVE/PHD zinc finger superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
RING/FYVE/PHD zinc finger superfamily protein; FUNCTIONS IN: zinc ion binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, PHD-type (InterPro:IPR001965), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: RING/FYVE/PHD zinc finger superfamily protein (TAIR:AT1G14770.2); Has 83 Blast hits to 71 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 18; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWFZeggNOG:ENOG410Z06IEMBL:AC012563EMBL:CP002684
EnsemblPlants:AT1G68030EnsemblPlants:AT1G68030.1entrez:843131Gene3D:3.30.40.10
GeneID:843131GO:GO:0008270Gramene:AT1G68030.1HOGENOM:HOG000152231
InterPro:IPR001965InterPro:IPR011011InterPro:IPR013083InterPro:IPR019786
KEGG:ath:AT1G68030OMA:SSESCEYPhylomeDB:Q9C9W7PIR:D96703
PROSITE:PS01359Proteomes:UP000006548RefSeq:NP_176970.1scanprosite:PS01359
SMART:SM00249SMR:Q9C9W7SUPFAM:SSF57903TAIR:AT1G68030
UniGene:At.52429UniProt:Q9C9W7
Coordinates (TAIR10) chr1:-:25500378..25501544
Molecular Weight (calculated) 35413.80 Da
IEP (calculated) 4.35
GRAVY (calculated) -0.39
Length 314 amino acids
Sequence (TAIR10)
(BLAST)
001: MEPPNSNSVC DRFVTGNLDL DNWIWIIEYF AKFKTELWML NDVFELAPKL PDYLGEYTNE MVAFRCLASL FDSHVVSVTT TTTTTSMIEF DSSESCEYVL
101: QCILDEIPLS ELKPGAPGLT KWNLQPFIKH KLLSLPKCAL ELMIEPSSCE NDTQVSPCSE EETLRSDGKE NDRVTPPMDE PDLTGRTEEG ESFSRGADEL
201: LDRRNAGFRY ESENDGSHLS SPVEKIYRCV NCKESGKLLF CSSDGCEVMV HQKCLDSPPS YHDAGDFYCS LCALTCPSAE YVQFQDEVAK AKRKLVSFLR
301: LMSEVNKKKS IEGT
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)