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AT1G66650.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Protein with RING/U-box and TRAF-like domains
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein with RING/U-box and TRAF-like domains; FUNCTIONS IN: ubiquitin-protein ligase activity, zinc ion binding; INVOLVED IN: multicellular organismal development, protein ubiquitination, ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 4 anthesis, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), TRAF-like (InterPro:IPR008974), Seven-in-absentia protein, TRAF-like domain (InterPro:IPR018121), Zinc finger, SIAH-type (InterPro:IPR013010), Seven In Absentia Homolog-type (InterPro:IPR013323), Seven-in-absentia protein, sina (InterPro:IPR004162); BEST Arabidopsis thaliana protein match is: Protein with RING/U-box and TRAF-like domains (TAIR:AT5G37930.1); Has 1538 Blast hits to 1533 proteins in 685 species: Archae - 0; Bacteria - 0; Metazoa - 1019; Fungi - 2; Plants - 466; Viruses - 2; Other Eukaryotes - 49 (source: NCBI BLink).
Protein Annotations
BioGrid:28204EC:6.3.2.-eggNOG:ENOG410XVP0eggNOG:KOG3002
EMBL:AC013288EMBL:AC079285EMBL:CP002684EnsemblPlants:AT1G66650
EnsemblPlants:AT1G66650.1entrez:842983Gene3D:3.90.890.10GeneID:842983
Genevisible:Q9C9M0GO:GO:0004842GO:GO:0005634GO:GO:0006511
GO:GO:0007275GO:GO:0008270GO:GO:0016874Gramene:AT1G66650.1
hmmpanther:PTHR10315hmmpanther:PTHR10315:SF43HOGENOM:HOG000154324InParanoid:Q9C9M0
InterPro:IPR004162InterPro:IPR008974InterPro:IPR013010InterPro:IPR013323
InterPro:IPR018121KEGG:00220+6.3.2.-KEGG:00261+6.3.2.-KEGG:00380+6.3.2.-
KEGG:ath:AT1G66650KO:K04506OMA:SINIICVPANTHER:PTHR10315
PaxDb:Q9C9M0Pfam:PF03145Pfam:Q9C9M0Pfscan:PS51081
PhylomeDB:Q9C9M0PRIDE:Q9C9M0PRO:PR:Q9C9M0PROSITE:PS51081
ProteinModelPortal:Q9C9M0Proteomes:UP000006548RefSeq:NP_849853.1STRING:3702.AT1G66650.1
SUPFAM:SSF49599TAIR:AT1G66650UniGene:At.35744UniPathway:UPA00143
UniProt:Q9C9M0
Coordinates (TAIR10) chr1:-:24860113..24861821
Molecular Weight (calculated) 36940.50 Da
IEP (calculated) 8.39
GRAVY (calculated) -0.39
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MTKLGRRNDG GGKSHRSSTK RQRRTSVSVD DPSPGEEEEK TLVVLTDDSD SEEDDKPLGD VLRTCRKRRV SSPKSVTLPN SNVLECPNCF DPLKKPIFQC
101: NNGHLACFLC CIKLKKRCSF CKLPIGDVRC RAMEKVIKAG LVSCSNAIYG CKQSTTYGNQ LQSHEKVCVF APCSCPIKDC NYIGFYKDLI NHFRATHKVS
201: PGDINSFVFD RPVIFGLDLD SSDKMVIFVE EKQGNLFVVQ GFIGSHGVYA TVSHIAPMVP EVRKFSCSLA RLRPYSTLRL GLEVKNIQKL RSQEEQPQED
301: FLLIPSYMVN GDHMKMEISI GDKNDYTHI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)