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AT1G66300.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.724
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : F-box/RNI-like/FBD-like domains-containing protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box/RNI-like/FBD-like domains-containing protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), FBD (InterPro:IPR013596), F-box domain, Skp2-like (InterPro:IPR022364), FBD-like (InterPro:IPR006566), Leucine-rich repeat 2 (InterPro:IPR013101); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G66310.1); Has 1781 Blast hits to 1732 proteins in 25 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 1781; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
BioGrid:28168EMBL:AC020665EMBL:CP002684EnsemblPlants:AT1G66300
EnsemblPlants:AT1G66300.1entrez:842947Gene3D:3.80.10.10GeneID:842947
Gramene:AT1G66300.1hmmpanther:PTHR32212hmmpanther:PTHR32212:SF126HOGENOM:HOG000015216
InParanoid:Q9C8Y7InterPro:IPR001810InterPro:IPR006566InterPro:IPR013101
InterPro:IPR032675KEGG:ath:AT1G66300OMA:MARWINDPaxDb:Q9C8Y7
Pfam:PF07723Pfam:PF08387Pfam:Q9C8Y7PhylomeDB:Q9C8Y7
PIR:B96688PRIDE:Q9C8Y7PRO:PR:Q9C8Y7ProteinModelPortal:Q9C8Y7
Proteomes:UP000006548RefSeq:NP_176804.1SMART:SM00579SUPFAM:SSF52047
SUPFAM:SSF81383TAIR:AT1G66300UniGene:At.52398UniProt:Q9C8Y7
Coordinates (TAIR10) chr1:-:24716497..24718050
Molecular Weight (calculated) 52339.80 Da
IEP (calculated) 6.40
GRAVY (calculated) -0.03
Length 456 amino acids
Sequence (TAIR10)
(BLAST)
001: MDEDGEKRVR TKRLCSPESS DKKSGYEVDW VRDLPESLIC HVLLNLSTKD VIKNCVLSTK WRYLWRYVPG LDLDCSDFTE YNTFVSFVDR FLSTNTESYL
101: NKFKLGFDCD LVGDEETGNA QMARWINDVV KRKVQHLDLE WGALEIPPIV YVCKSLVSLK LCGVILPIPE FVCLPSVKVI VLDWVKFAND LALEMLISGC
201: LVLKSLTLCR SNNDNVKVLR VRSQSLLSFN YNGPNTMGPE YEELIVEIDT PKLQDLTLSH RMTASFIIKN RSSLVGAHIN IEFNFCFGEK FDPKNLPKRE
301: MIRNFLVGIS GVKNMAIAAC TLEVIYDYSR CEPLPLFRNL CLLSVEFYED RWEMLPFFLE SCPNLKSLVV GSNRYRMERT SIISGHRCLL SSLEYVEIET
401: PLTGEVFEMK LVSYLLENSP ILKKLTIHLH DNSRKKAECE ILTIPRRSSS CQVILL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)