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AT1G64000.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : WRKY DNA-binding protein 56
Curator
Summary (TAIR10)
member of WRKY Transcription Factor; Group II-c
Computational
Description (TAIR10)
WRKY DNA-binding protein 56 (WRKY56); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 24 (TAIR:AT5G41570.1); Has 3510 Blast hits to 3053 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3491; Viruses - 0; Other Eukaryotes - 19 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J00NeggNOG:ENOG410YINNEMBL:AC007764EMBL:AY071848
EMBL:AY088461EMBL:CP002684EnsemblPlants:AT1G64000EnsemblPlants:AT1G64000.1
entrez:842703ExpressionAtlas:Q8VWQ4Gene3D:2.20.25.80GeneID:842703
Genevisible:Q8VWQ4GO:GO:0003700GO:GO:0005634GO:GO:0006351
GO:GO:0043565Gramene:AT1G64000.1hmmpanther:PTHR31221hmmpanther:PTHR31221:SF7
HOGENOM:HOG000237589InParanoid:Q8VWQ4InterPro:IPR003657KEGG:ath:AT1G64000
OMA:AMQRIAFPaxDb:Q8VWQ4Pfam:PF03106Pfam:Q8VWQ4
Pfscan:PS50811PhylomeDB:Q8VWQ4PRIDE:Q8VWQ4PRO:PR:Q8VWQ4
PROSITE:PS50811ProteinModelPortal:Q8VWQ4Proteomes:UP000006548RefSeq:NP_176583.1
SMART:SM00774SMR:Q8VWQ4STRING:3702.AT1G64000.1SUPFAM:0050605
SUPFAM:SSF118290TAIR:AT1G64000tair10-symbols:ATWRKY56tair10-symbols:WRKY56
UniGene:At.36060UniProt:Q29PS1UniProt:Q8VWQ4
Coordinates (TAIR10) chr1:+:23747434..23748883
Molecular Weight (calculated) 21775.60 Da
IEP (calculated) 8.22
GRAVY (calculated) -0.77
Length 195 amino acids
Sequence (TAIR10)
(BLAST)
001: MEGVDNTNPM LTLEEGENNN PFSSLDDKTL MMMAPSLIFS GDVGPSSSSC TPAGYHLSAQ LENFRGGGGE MGGLVSNNSN NSDHNKNCNK GKGKRTLAMQ
101: RIAFHTRSDD DVLDDGYRWR KYGQKSVKNN AHPRSYYRCT YHTCNVKKQV QRLAKDPNVV VTTYEGVHNH PCEKLMETLS PLLRQLQFLS RVSDL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)