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AT1G56710.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Pectin lyase-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Pectin lyase-like superfamily protein; FUNCTIONS IN: polygalacturonase activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: endomembrane system; EXPRESSED IN: stem, embryo, leaf whorl, sepal, pedicel; EXPRESSED DURING: 4 anthesis, C globular stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectin lyase fold (InterPro:IPR012334), Glycoside hydrolase, family 28 (InterPro:IPR000743), Parallel beta-helix repeat (InterPro:IPR006626); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G02460.1); Has 4176 Blast hits to 4154 proteins in 491 species: Archae - 6; Bacteria - 1245; Metazoa - 14; Fungi - 1278; Plants - 1491; Viruses - 0; Other Eukaryotes - 142 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G56710-MONOMERCAZy:GH28eggNOG:COG5434eggNOG:ENOG410IH6J
EMBL:AC009323EMBL:CP002684EnsemblPlants:AT1G56710EnsemblPlants:AT1G56710.1
entrez:842127Gene3D:2.160.20.10GeneID:842127GO:GO:0004650
GO:GO:0005576GO:GO:0005975GO:GO:0016829GO:GO:0071555
Gramene:AT1G56710.1gramene_pathway:3.2.1.15gramene_pathway:PWY-1081hmmpanther:PTHR31375
hmmpanther:PTHR31375:SF13HOGENOM:HOG000237792InterPro:IPR000743InterPro:IPR006626
InterPro:IPR011050InterPro:IPR012334KEGG:ath:AT1G56710OMA:IHIENTH
Pfam:PF00295PhylomeDB:Q9FXC1PIR:A96609PROSITE:PS00502
Proteomes:UP000006548RefSeq:NP_176064.1scanprosite:PS00502SMART:SM00710
SMR:Q9FXC1SUPFAM:SSF51126TAIR:AT1G56710UniGene:At.49984
UniProt:Q9FXC1
Coordinates (TAIR10) chr1:-:21258206..21259922
Molecular Weight (calculated) 47445.40 Da
IEP (calculated) 7.09
GRAVY (calculated) -0.04
Length 434 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLPNSLFYT FFLILFSTIR IAQSIYLSPS PAPNPAYNDN DNIAPTVFDV TSFGAIGDCS TDDTSAFKMA WDAACMSTGP KSALLLVPYT FCFLVKPTTF
101: NGPCRTNLVL QIDGFIVSPD GPRSWPSNYQ RQWMMFYRVN GLSIQGSGVI NGRGQKWWNL PCKPHKGLNG TTQTGPCDSP VAIRLFQSSK VRIQGINFMN
201: SAQFHVRFDN CSDVVVDSVI IKAPASSPNT DGIHIENTHN VQIRNSMISN GDDCISIGAG CFNVDIKNVT CGPSHGISIG SLGVHNSQAY VSNITVTNST
301: IWNSDNGVRI KTWQGGSGSV SRIVFSNILM VNVRNPIMID QYYCQTNNCA NQTSAVIISD VLYANIKGTY DLRSPPIHFG CSDSVPCTNL TLTEVDLFPS
401: KGQHLENPFC WNAYGSMKIT VPPVYCLLDA PPDF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)