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AT1G55060.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
cytosol 0.816
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30447334 (2019): plasma membrane
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : ubiquitin 12
Curator
Summary (TAIR10)
Ubiquitin-like gene, believed to be a pseudogene because of amino acid substitutions in 3 of the 5 ubiquitin repeats found in the UBQ12 gene product
Computational
Description (TAIR10)
ubiquitin 12 (UBQ12); CONTAINS InterPro DOMAIN/s: Ubiquitin subgroup (InterPro:IPR019956), Ubiquitin conserved site (InterPro:IPR019954), Ubiquitin (InterPro:IPR000626), Ubiquitin supergroup (InterPro:IPR019955); BEST Arabidopsis thaliana protein match is: polyubiquitin 3 (TAIR:AT5G03240.3); Has 19950 Blast hits to 7287 proteins in 722 species: Archae - 0; Bacteria - 57; Metazoa - 9247; Fungi - 2282; Plants - 4139; Viruses - 488; Other Eukaryotes - 3737 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5272eggNOG:KOG0001EMBL:AC073944EMBL:CP002684
EnsemblPlants:AT1G55060EnsemblPlants:AT1G55060.1entrez:841949GeneID:841949
Genevisible:Q3E7K8GO:GO:0005634GO:GO:0005737GO:GO:0006511
Gramene:AT1G55060.1HOGENOM:HOG000233942InParanoid:Q3E7K8InterPro:IPR000626
InterPro:IPR019954InterPro:IPR019956InterPro:IPR029071iPTMnet:Q3E7K8
KEGG:ath:AT1G55060KO:K08770OMA:HEDGRTLPaxDb:Q3E7K8
Pfam:PF00240Pfam:Q3E7K8Pfscan:PS50053PhylomeDB:Q3E7K8
PRIDE:Q3E7K8PRINTS:PR00348PRO:PR:Q3E7K8PROSITE:PS00299
PROSITE:PS50053ProteinModelPortal:Q3E7K8Proteomes:UP000006548Reactome:R-ATH-110312
Reactome:R-ATH-110314Reactome:R-ATH-110320Reactome:R-ATH-174184Reactome:R-ATH-179409
Reactome:R-ATH-349425Reactome:R-ATH-450302Reactome:R-ATH-450321Reactome:R-ATH-5358346
Reactome:R-ATH-5632684Reactome:R-ATH-5655862Reactome:R-ATH-5656121Reactome:R-ATH-5656169
Reactome:R-ATH-5696394Reactome:R-ATH-5696395Reactome:R-ATH-5696397Reactome:R-ATH-5696400
Reactome:R-ATH-6781823Reactome:R-ATH-6782135Reactome:R-ATH-6782210Reactome:R-ATH-68949
Reactome:R-ATH-69017Reactome:R-ATH-917729Reactome:R-ATH-983168RefSeq:NP_564675.1
scanprosite:PS00299SMART:SM00213SMR:Q3E7K8STRING:3702.AT1G55060.1
SUPFAM:SSF54236TAIR:AT1G55060tair10-symbols:UBQ12UniGene:At.25274
UniGene:At.47590UniGene:At.49314UniProt:Q3E7K8
Coordinates (TAIR10) chr1:+:20549533..20550225
Molecular Weight (calculated) 25844.10 Da
IEP (calculated) 6.70
GRAVY (calculated) -0.45
Length 230 amino acids
Sequence (TAIR10)
(BLAST)
001: MQIFLKTLTG KTKVLEVESS DTIDNVKAKI QDIEGIPPDQ HRLIFAGKQL EDGRTLADYN VQEDSTLHLL LRFRGGMQIF VKTLTGKTIT LEVESSDTID
101: NLKAKIQDKE GIPPDQQRLI FAGKQLEDGR TLADYNIQKE STLHLVLRLR GGMQIFVKTL TGKTITLEVE SSDTIDNVKA KIQDKEGISP DQQRLIFAGK
201: QHEDGRTLAD YNIQKESTLH LVLRLRGGSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)