AT1G53880.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 1.000 ASURE: cytosol What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Eukaryotic translation initiation factor 2B (eIF-2B) family protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Eukaryotic translation initiation factor 2B (eIF-2B) family protein; FUNCTIONS IN: GTP binding, translation initiation factor activity; INVOLVED IN: translational initiation, cellular metabolic process; LOCATED IN: eukaryotic translation initiation factor 2B complex; CONTAINS InterPro DOMAIN/s: Initiation factor 2B related (InterPro:IPR000649), Protein of unknown function DUF567 (InterPro:IPR007612); BEST Arabidopsis thaliana protein match is: Eukaryotic translation initiation factor 2B (eIF-2B) family protein (TAIR:AT1G53900.1); Has 4713 Blast hits to 4711 proteins in 1040 species: Archae - 371; Bacteria - 1745; Metazoa - 521; Fungi - 487; Plants - 467; Viruses - 0; Other Eukaryotes - 1122 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:+:20115069..20118269 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 65139.50 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 7.79 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.17 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 580 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVKIHPDKAF PVDFSVGEGK TSPYLTTEKE SFTIWMRSLV FHSKGCTVFD SKGNLIYRVD NYNSKSCSEV YLMDLYGKIL FTLRQKKLGL FKSWKGYNST 101: GTRFQLRKNF KILPKGSSSS YKVVMGSRIV DGDHQSCYKI VKRKSVFTIE DGSGRLLAEV KKKQSNIKSL DLGKDVLTMM VEPQLETEIF EEFIKMWRES 201: ASFILDKHQN NKPISLTHSI DSPPPPSASM ADENPNPNPI SAYYQTRAAH HGIVTSEWLE QAQAAVRRYP DRDSLVSGRP FSVIEDFNSW RQQPDLAEAV 301: AAIRALAAVI RASEATTMME LEIELKKASD TLKSWDTTSI SLTAGCDLFM RYVTRTSALE FEDFNSAKSR VLERAEKFGE ISCKARTIIA MLSQDFIFDG 401: CTILVHGFSR VVFEILKTSA QNKKLFRVLC TEGRPDKTGV LLANELAKLD IPVKLLIDSA VAYSMDEVDM VFVGADGVVE SGGIINMMGT YQIALVAQSM 501: NKPVYVAAES YKFARLYPLD QKDLEPALRP IDFSVPVPPK VEVERSARDY TPPQYLTLLF TDLGVLTPSV VSDELIQLYL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)