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AT1G49910.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transducin/WD40 repeat-like superfamily protein
Curator
Summary (TAIR10)
Encodes a homolog of the yeast and human BUB3 (BUDDING UNINHIBITED BY BENZYMIDAZOL 3) protein. Yeast and human BUB3s function in spindle assembly checkpoint control.
Computational
Description (TAIR10)
BUB (BUDDING UNINHIBITED BY BENZYMIDAZOL) 3.2 (BUB3.2); CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781), G-protein beta WD-40 repeat, region (InterPro:IPR020472); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT3G19590.1); Has 8710 Blast hits to 6264 proteins in 448 species: Archae - 22; Bacteria - 1987; Metazoa - 2791; Fungi - 2014; Plants - 703; Viruses - 0; Other Eukaryotes - 1193 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRBGeggNOG:KOG1036EMBL:AC074110EMBL:AC079674
EMBL:CP002684EnsemblPlants:AT1G49910EnsemblPlants:AT1G49910.1entrez:841414
Gene3D:2.130.10.10GeneID:841414Genevisible:Q9C701GO:GO:0000777
GO:GO:0005634GO:GO:0005819GO:GO:0007059GO:GO:0007067
GO:GO:0009524GO:GO:0051301GO:GO:0051321Gramene:AT1G49910.1
hmmpanther:PTHR10971HOGENOM:HOG000208822InParanoid:Q9C701InterPro:IPR001680
InterPro:IPR015943InterPro:IPR017986InterPro:IPR020472KEGG:ath:AT1G49910
KO:K02180OMA:CHRKSEDPaxDb:Q9C701Pfam:PF00400
Pfam:Q9C701Pfscan:PS50082Pfscan:PS50294PhylomeDB:Q9C701
PRIDE:Q9C701PRINTS:PR00320PRO:PR:Q9C701PROSITE:PS50082
PROSITE:PS50294ProteinModelPortal:Q9C701Proteomes:UP000006548Reactome:R-ATH-141430
Reactome:R-ATH-174184Reactome:R-ATH-179409RefSeq:NP_175413.1SMART:SM00320
SMR:Q9C701STRING:3702.AT1G49910.1SUPFAM:SSF50978TAIR:AT1G49910
tair10-symbols:BUB3.2UniGene:At.38135UniProt:Q9C701
Coordinates (TAIR10) chr1:+:18479025..18481271
Molecular Weight (calculated) 37672.30 Da
IEP (calculated) 7.95
GRAVY (calculated) -0.49
Length 339 amino acids
Sequence (TAIR10)
(BLAST)
001: MTLVPAIGRE LSNPPSDGIS NLRFSNNSDH LLVSSWDKSV RLYDANGDLM RGEFKHGGAV LDCCFHDDSS GFSVCADTKV RRIDFNAGKE DVLGTHEKPV
101: RCVEYSYAAG QVITGSWDKT IKCWDPRGAS GTERTQIGTY MQPERVNSLS LVGNRLVVAT AGRHVNIYDL RNMSQPEQRR ESSLKYQTRC VRCYPNGTGY
201: ALSSVEGRVS MEFFDLSEAA QAKKYAFKCH RKSEDGRDIV YPVNAIAFHP IYGTFASGGC DGFVNIWDGN NKKRLYQYSK YPTSIAALSF SRDGGLLAVA
301: SSYTFEEGDK PHEPDAIFVR SVNEIEVKPK PKVYPNPPV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)