AT1G48390.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.985 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : RNI-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
RNI-like superfamily protein; CONTAINS InterPro DOMAIN/s: FBD-like (InterPro:IPR006566); BEST Arabidopsis thaliana protein match is: F-box/RNI-like/FBD-like domains-containing protein (TAIR:AT1G48400.1); Has 494 Blast hits to 486 proteins in 6 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 494; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr1:-:17879448..17880903 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 47295.60 Da | ||||||||||||||||||||||||
| IEP (calculated) | 5.67 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.16 | ||||||||||||||||||||||||
| Length | 413 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVVYPNEEAE NGSLRFVDFV NKTFALLGNS PIKKFSLRHE PRLYCVDAYL RWIFTAMEQE RGLLELHLYA DRYYYPVGIE RELFTSNTLV KLTLSGRYDF 101: QVETVFLPAL KSLSLSSSFE IGFDKYCNLL DGFPALEELY IREAVSELSN ALLSSGTFVK CASIKRLVVF TDCPKFKEDE DHQEPCFIAP SLVYLDYSSY 201: LSENYDLIDL NSLVEARLNL RLLESFNNYG SSDNDGDVYG WDFNVPFDYY GDVTNLVAGI TNITTLHLSP DSLEVFHFRC KSIPVFNNLL LNLSIESNKR 301: NGWQVMPLLI RSCPNLHTLV IKGFVHRVTS KCGDACACIP KKQRKIGKKE EISEYGGSFQ ELEQMRHFLG KLERLETVKV GVHAENNNNN EFLRANLLTL 401: PRLSSKCNNI QFI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)