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AT1G43000.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 0.977
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : PLATZ transcription factor family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
PLATZ transcription factor family protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF597 (InterPro:IPR006734); BEST Arabidopsis thaliana protein match is: PLATZ transcription factor family protein (TAIR:AT1G21000.1); Has 398 Blast hits to 398 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 398; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
EMBL:AC068324EMBL:CP002684EnsemblPlants:AT1G43000EnsemblPlants:AT1G43000.1
entrez:840898GeneID:840898Gramene:AT1G43000.1hmmpanther:PTHR31065
hmmpanther:PTHR31065:SF12HOGENOM:HOG000235045InterPro:IPR006734KEGG:ath:AT1G43000
OMA:HIDISCIPfam:PF04640PhylomeDB:Q9C7R9Proteomes:UP000006548
RefSeq:NP_174999.1TAIR:AT1G43000UniGene:At.52004UniProt:Q9C7R9
Coordinates (TAIR10) chr1:+:16140816..16141655
Molecular Weight (calculated) 24220.00 Da
IEP (calculated) 8.38
GRAVY (calculated) -0.31
Length 216 amino acids
Sequence (TAIR10)
(BLAST)
001: MENDDVMTPP WLTPMLRADY FVTCSIHSQS SKSECNLFCL DCSGNAFCSS CLAHHRTHRV IQIRRSSYHN VVRVSEIQKH IDISCIQTYV INSAKIFFLN
101: ARPQCRTGKS LNKTCQICSR NLLDSFLFCS LACKLEGVKN GEDPNLTLFH SGKSDDSSKI INTGICSRLI DGISIAVDDQ RSETAGVLSP ETPSIESHRN
201: YPMKSRRKGI PQRAPF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)