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AT1G30100.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : nine-cis-epoxycarotenoid dioxygenase 5
Curator
Summary (TAIR10)
Encodes 9-cis-epoxycarotenoid dioxygenase, a key enzyme in the biosynthesis of abscisic acid. The expression of this gene increases during the first 6h of imbibition.
Computational
Description (TAIR10)
nine-cis-epoxycarotenoid dioxygenase 5 (NCED5); CONTAINS InterPro DOMAIN/s: Carotenoid oxygenase (InterPro:IPR004294); BEST Arabidopsis thaliana protein match is: nine-cis-epoxycarotenoid dioxygenase 2 (TAIR:AT4G18350.1); Has 2882 Blast hits to 2845 proteins in 494 species: Archae - 16; Bacteria - 802; Metazoa - 232; Fungi - 202; Plants - 893; Viruses - 0; Other Eukaryotes - 737 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT1G30100-MONOMERBRENDA:1.13.11.51EC:1.13.11.51eggNOG:COG3670
eggNOG:KOG1285EMBL:AC074176EMBL:AK226774EMBL:CP002684
EnsemblPlants:AT1G30100EnsemblPlants:AT1G30100.1entrez:839889GeneID:839889
Genevisible:Q9C6Z1GO:GO:0009414GO:GO:0009535GO:GO:0009579
GO:GO:0009688GO:GO:0010162GO:GO:0045549GO:GO:0046872
Gramene:AT1G30100.1gramene_pathway:1.13.11.51gramene_pathway:PWY-695hmmpanther:PTHR10543
hmmpanther:PTHR10543:SF42HOGENOM:HOG000254836InParanoid:Q9C6Z1IntAct:Q9C6Z1
InterPro:IPR004294KEGG:ath:AT1G30100KO:K09840OMA:HDEESWE
PANTHER:PTHR10543PaxDb:Q9C6Z1Pfam:PF03055Pfam:Q9C6Z1
PhylomeDB:Q9C6Z1PIR:A86425PRIDE:Q9C6Z1PRO:PR:Q9C6Z1
ProteinModelPortal:Q9C6Z1Proteomes:UP000006548RefSeq:NP_174302.1SMR:Q9C6Z1
STRING:3702.AT1G30100.1TAIR:AT1G30100tair10-symbols:ATNCED5tair10-symbols:NCED5
UniGene:At.51834UniProt:Q9C6Z1
Coordinates (TAIR10) chr1:+:10571383..10573152
Molecular Weight (calculated) 65340.50 Da
IEP (calculated) 5.76
GRAVY (calculated) -0.32
Length 589 amino acids
Sequence (TAIR10)
(BLAST)
001: MACSYILTPN PTKLNLSFAP SDLDAPSPSS SVSFTNTKPR RRKLSANSVS DTPNLLNFPN YPSPNPIIPE KDTSRWNPLQ RAASAALDFA ETALLRRERS
101: KPLPKTVDPR HQISGNYAPV PEQSVKSSLS VDGKIPDCID GVYLRNGANP LFEPVSGHHL FDGDGMVHAV KITNGDASYS CRFTETERLV QEKQLGSPIF
201: PKAIGELHGH SGIARLMLFY ARGLFGLLNH KNGTGVANAG LVYFHDRLLA MSEDDLPYQV RVTDNGDLET IGRFDFDGQL SSAMIAHPKI DPVTKELFAL
301: SYDVVKKPYL KYFKFSPEGE KSPDVEIPLA SPTMMHDFAI TENFVVIPDQ QVVFKLSDMF LGKSPVKYDG EKISRFGILP RNAKDASEMV WVESPETFCF
401: HLWNAWESPE TDEVVVIGSC MTPADSIFNE CDEQLNSVLS EIRLNLKTGK STRRTIIPGS VQMNLEAGMV NRNLLGRKTR YAYLAIAEPW PKVSGFAKVD
501: LSTGEVKNHF YGGKKYGGEP FFLPRGLESD GEDDGYIMSF VHDEESWESE LHIVNAVTLE LEATVKLPSR VPYGFHGTFV NSADMLNQA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)