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AT1G23300.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
vacuole 0.540
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : MATE efflux family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: MATE efflux family protein (TAIR:AT3G26590.1); Has 9654 Blast hits to 9598 proteins in 1955 species: Archae - 179; Bacteria - 6865; Metazoa - 142; Fungi - 320; Plants - 1342; Viruses - 0; Other Eukaryotes - 806 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0534eggNOG:KOG1347EMBL:AC005292EMBL:CP002684
EnsemblPlants:AT1G23300EnsemblPlants:AT1G23300.1entrez:838939GeneID:838939
Genevisible:F4I4Q3GO:GO:0015238GO:GO:0015297GO:GO:0016021
Gramene:AT1G23300.1HOGENOM:HOG000177025InParanoid:F4I4Q3InterPro:IPR002528
iPTMnet:F4I4Q3KEGG:ath:AT1G23300KO:K03327OMA:FATAKFL
PaxDb:F4I4Q3Pfam:PF01554PIR:A86367PRIDE:F4I4Q3
ProteinModelPortal:F4I4Q3Proteomes:UP000006548RefSeq:NP_173744.1SMR:F4I4Q3
STRING:3702.AT1G23300.1TAIR:AT1G23300TIGRfam:TIGR00797TIGRFAMs:TIGR00797
TMHMM:TMhelixUniGene:At.51733UniProt:F4I4Q3
Coordinates (TAIR10) chr1:-:8263827..8266048
Molecular Weight (calculated) 56365.60 Da
IEP (calculated) 8.24
GRAVY (calculated) 0.49
Length 515 amino acids
Sequence (TAIR10)
(BLAST)
001: METLNVDHED TISSEQEHRA HTKSDTDMPP ISGGRDFIRQ FAAESKKLWW LAGPAIFTSF CQYSLGAVTQ ILAGHVNTLA LAAVSIQNSV ISGFSVGIML
101: GMGSALATLC GQAYGAGQLE MMGIYLQRSW IILNSCALLL CLFYVFATPL LSLLGQSPEI SKAAGKFSLW MIPQLFAYAV NFATAKFLQA QSKVIAMAVI
201: AATVLLQHTL LSWLLMLKLR WGMAGGAVVL NMSWWLIDVT QIVYICGGSS GRAWSGLSWM AFKNLRGFAR LSLASAVMVC LEVWYFMALI LFAGYLKNPQ
301: VSVAALSICM NILGWPIMVA FGFNAAVSVR ESNELGAEHP RRAKFLLIVA MITSVSIGIV ISVTLIVLRD KYPAMFSDDE EVRVLVKQLT PLLALTIVIN
401: NIQPVLSGVA VGAGWQGIVA YVNIGCYYLC GIPIGLVLGY KMELGVKGIW TGMLTGTVVQ TSVLLFIIYR TNWKKEASLA EARIKKWGDQ SNKREEIDLC
501: EEDENNSNGE NNHRK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)