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AT1G15700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : ATPase, F1 complex, gamma subunit protein
Curator
Summary (TAIR10)
One of two genes that encode the gamma subunit of Arabidopsis chloroplast ATP synthase. It is thought to be involved in the regulation of the ATP synthase activity.
Computational
Description (TAIR10)
ATPC2; FUNCTIONS IN: enzyme regulator activity; INVOLVED IN: ATP synthesis coupled proton transport; LOCATED IN: chloroplast ATP synthase complex, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, F1 complex, gamma subunit (InterPro:IPR000131); BEST Arabidopsis thaliana protein match is: ATPase, F1 complex, gamma subunit protein (TAIR:AT4G04640.1); Has 9547 Blast hits to 9544 proteins in 2715 species: Archae - 5; Bacteria - 5540; Metazoa - 280; Fungi - 148; Plants - 177; Viruses - 0; Other Eukaryotes - 3397 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-686-MONOMERBioGrid:23379eggNOG:COG0224eggNOG:KOG1531
EMBL:AC034256EMBL:AY065255EMBL:AY117311EMBL:CP002684
EMBL:M61742EnsemblPlants:AT1G15700EnsemblPlants:AT1G15700.1entrez:838139
GeneID:838139Genevisible:Q01909GO:GO:0009507GO:GO:0009544
GO:GO:0015986GO:GO:0030234GO:GO:0045261GO:GO:0046933
GO:GO:0046961GO:GO:0050790GO:GO:2000067Gramene:AT1G15700.1
HAMAP:MF_00815hmmpanther:PTHR11693hmmpanther:PTHR11693:SF21HOGENOM:HOG000215910
InParanoid:Q01909IntAct:Q01909InterPro:IPR000131InterPro:IPR023632
InterPro:IPR023633iPTMnet:Q01909KEGG:ath:AT1G15700KO:K02115
ncoils:CoilOMA:RVAYIIIPANTHER:PTHR11693PaxDb:Q01909
Pfam:PF00231Pfam:Q01909PhylomeDB:Q01909PIR:A39732
PRIDE:Q01909PRINTS:PR00126PRO:PR:Q01909PROSITE:PS00153
ProteinModelPortal:Q01909Proteomes:UP000006548RefSeq:NP_173022.1scanprosite:PS00153
SMR:Q01909STRING:3702.AT1G15700.1SUPFAM:SSF52943TAIR:AT1G15700
tair10-symbols:ATPC2TIGRfam:TIGR01146TIGRFAMs:TIGR01146UniGene:At.21942
UniGene:At.66944UniProt:Q01909
Coordinates (TAIR10) chr1:-:5402629..5403789
Molecular Weight (calculated) 42681.50 Da
IEP (calculated) 7.11
GRAVY (calculated) -0.15
Length 386 amino acids
Sequence (TAIR10)
(BLAST)
001: MTGSISTSWL LSSPSNSNSA SSSESYSFIA TLKPVRYYPF QSLTPNRISS RSPLPSIQIR AGIRELRERI DSVKNTQKIT EAMRLVAAAR VRRAQDAVIK
101: GRPFTETLVE ILYSINQSAQ LEDIDFPLSI VRPVKRVALV VVTGDKGLCG GFNNAVTKKA TLRVQELKQR GIDCVVISVG KKGNAYFSRR DEFDVDKCIE
201: GGGVFPTTKE AQVIADDVFS LFVSEEVDKV ELVYTKFVSL VKSDPVIHTL LPLSMKGESC DVKGECVDAI EDEMFRLTSK DGKLAVERTK LEVEKPEISP
301: LMQFEQDPVQ ILDAMMPLYL NSQILRALQE SLASELASRM NAMSNATDNA VELKKNLTMA YNRARQAKIT GELLEIVAGA EALRES
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)