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AT1G11810.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : F-box associated ubiquitination effector family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
F-box associated ubiquitination effector family protein; CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), F-box domain, Skp2-like (InterPro:IPR022364), F-box associated domain, type 1 (InterPro:IPR006527), F-box associated interaction domain (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: F-box and associated interaction domains-containing protein (TAIR:AT3G13830.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:22969DNASU:837729EMBL:AC007296EMBL:BT015465
EMBL:BT029542EMBL:CP002684EnsemblPlants:AT1G11810EnsemblPlants:AT1G11810.1
entrez:837729GeneID:837729Genevisible:Q9SA94Gramene:AT1G11810.1
hmmpanther:PTHR32133hmmpanther:PTHR32133:SF82HOGENOM:HOG000112505InParanoid:Q9SA94
IntAct:Q9SA94InterPro:IPR001810InterPro:IPR006527InterPro:IPR017451
KEGG:ath:AT1G11810OMA:TTIGIWIPaxDb:Q9SA94Pfam:PF00646
Pfam:PF07734Pfam:Q9SA94PhylomeDB:Q9SA94PIR:C86252
PRIDE:Q9SA94PRO:PR:Q9SA94ProteinModelPortal:Q9SA94Proteomes:UP000006548
RefSeq:NP_172646.3STRING:3702.AT1G11810.1SUPFAM:SSF81383TAIR:AT1G11810
TIGRfam:TIGR01640TIGRFAMs:TIGR01640UniGene:At.10643UniGene:At.73943
UniProt:Q9SA94
Coordinates (TAIR10) chr1:+:3989763..3990896
Molecular Weight (calculated) 42483.40 Da
IEP (calculated) 5.02
GRAVY (calculated) -0.12
Length 377 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTTMSTLPV VLVDEILARV PITSLRSLRS TCKKWEASSK TNLVGGKATA RKSSHVGFIL IGDKICSMKL DLNGGDDFVD TSVNQVSAFD GFAISQLFHC
101: DGLLFCISNN HYSNYTLMVC NMYLGETRLI QNRSLFESYQ NFCSYAFGYD SSKNRNHKIL RNNSVSGGYE IYSLKSDSWK DLNVDLEKSI HLWRLGSVSL
201: KGNAYFRVIK VIEEGVWEYN LLCFDFTRES FGKLLSLPFE SLGDEGEGIM VISCVRDDHL AVLYQRDTLG IWISTEIEPN KVSWREFLQV DLATLDGFPD
301: VFIAGRFIVD EEKQVVVVFG QETELDLNHG NAFIFGRDGY FTSFTVGDAP PEDFTSYVPS LVSLQIDKTG KRKARDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)