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AT1G04880.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G76110.1); Has 3445 Blast hits to 3110 proteins in 301 species: Archae - 0; Bacteria - 5; Metazoa - 2269; Fungi - 308; Plants - 431; Viruses - 3; Other Eukaryotes - 429 (source: NCBI BLink).
Protein Annotations
BioGrid:24623eggNOG:ENOG410Y2APeggNOG:KOG0381eggNOG:KOG2744
EMBL:AB493433EMBL:AC004809EMBL:BT020255EMBL:BT020442
EMBL:CP002684EnsemblPlants:AT1G04880EnsemblPlants:AT1G04880.1entrez:839388
Gene3D:1.10.150.60Gene3D:1.10.30.10GeneID:839388Genevisible:Q9MAT6
GO:GO:0003700GO:GO:0005634GO:GO:0006351GO:GO:0006355
GO:GO:0044212Gramene:AT1G04880.1hmmpanther:PTHR13711hmmpanther:PTHR13711:SF213
HOGENOM:HOG000243289InParanoid:Q9MAT6InterPro:IPR001606InterPro:IPR009071
iPTMnet:Q9MAT6KEGG:ath:AT1G04880ncoils:CoilOMA:YRIEMED
PaxDb:Q9MAT6Pfam:PF00505Pfam:PF01388Pfam:Q9MAT6
Pfscan:PS50118Pfscan:PS51011PhylomeDB:Q9MAT6PIR:B86182
PRIDE:Q9MAT6PRO:PR:Q9MAT6PROSITE:PS50118PROSITE:PS51011
ProteinModelPortal:Q9MAT6Proteomes:UP000006548RefSeq:NP_171980.1SMART:SM00398
SMART:SM00501SMR:Q9MAT6STRING:3702.AT1G04880.1SUPFAM:SSF46774
SUPFAM:SSF47095TAIR:AT1G04880UniGene:At.42427UniProt:Q9MAT6
Coordinates (TAIR10) chr1:-:1376106..1378264
Molecular Weight (calculated) 50007.00 Da
IEP (calculated) 5.27
GRAVY (calculated) -0.66
Length 448 amino acids
Sequence (TAIR10)
(BLAST)
001: MASSSCLKQG SVPMNNVCVT PEATYEAVVA DPRLFMTSLE RLHSLLGTKF MVPIIGGRDL DLHKLFVEVT SRGGINKILN ERRWKEVTAT FVFPPTATNA
101: SYVLRKYYFS LLNNYEQIYF FRSNGQIPPD SMQSPSARPC FIQGAIRPSQ ELQALTFTPQ PKINTAEFLG GSLAGSNVVG VIDGKFESGY LVTVTIGSEQ
201: LKGVLYQLLP QNTVSYQTPQ QSHGVLPNTL NISANPQGVA GGVTKRRRRR KKSEIKRRDP DHPKPNRSGY NFFFAEQHAR LKPLHPGKDR DISRMIGELW
301: NKLNEDEKLI YQGKAMEDKE RYRTEMEDYR EKKKNGQLIS NAVPLQQRLP EQNVDMAEAD LPIDEVEEDD EEGDSSGSSG ESEPHDDQSI ETDPELEEPS
401: LNPSGPNLNP NPTEIVVAPK EKNGDVVMET SPLKKADEPT VAVTAEQN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)