AT1G04880.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:nucleus 1.000 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain; FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription; LOCATED IN: intracellular, nucleus; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: High mobility group, superfamily (InterPro:IPR009071), High mobility group, HMG1/HMG2 (InterPro:IPR000910), ARID/BRIGHT DNA-binding domain (InterPro:IPR001606); BEST Arabidopsis thaliana protein match is: HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain (TAIR:AT1G76110.1); Has 3445 Blast hits to 3110 proteins in 301 species: Archae - 0; Bacteria - 5; Metazoa - 2269; Fungi - 308; Plants - 431; Viruses - 3; Other Eukaryotes - 429 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr1:-:1376106..1378264 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 50007.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 5.27 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.66 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Length | 448 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MASSSCLKQG SVPMNNVCVT PEATYEAVVA DPRLFMTSLE RLHSLLGTKF MVPIIGGRDL DLHKLFVEVT SRGGINKILN ERRWKEVTAT FVFPPTATNA 101: SYVLRKYYFS LLNNYEQIYF FRSNGQIPPD SMQSPSARPC FIQGAIRPSQ ELQALTFTPQ PKINTAEFLG GSLAGSNVVG VIDGKFESGY LVTVTIGSEQ 201: LKGVLYQLLP QNTVSYQTPQ QSHGVLPNTL NISANPQGVA GGVTKRRRRR KKSEIKRRDP DHPKPNRSGY NFFFAEQHAR LKPLHPGKDR DISRMIGELW 301: NKLNEDEKLI YQGKAMEDKE RYRTEMEDYR EKKKNGQLIS NAVPLQQRLP EQNVDMAEAD LPIDEVEEDD EEGDSSGSSG ESEPHDDQSI ETDPELEEPS 401: LNPSGPNLNP NPTEIVVAPK EKNGDVVMET SPLKKADEPT VAVTAEQN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)