AT5G61090.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 0.912 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Polynucleotidyl transferase, ribonuclease H-like superfamily protein | ||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G61120.1); Has 24046 Blast hits to 15037 proteins in 1367 species: Archae - 80; Bacteria - 6670; Metazoa - 6830; Fungi - 2746; Plants - 3211; Viruses - 972; Other Eukaryotes - 3537 (source: NCBI BLink). | ||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:24574902..24577585 | ||||||||||||||||||||||||
| Molecular Weight (calculated) | 72243.20 Da | ||||||||||||||||||||||||
| IEP (calculated) | 10.10 | ||||||||||||||||||||||||
| GRAVY (calculated) | -0.38 | ||||||||||||||||||||||||
| Length | 657 amino acids | ||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSPGQLPSDS IKVVPGRSKL RVESSNPVAR GNPTPRASKV KLLSPEEAMK LTSGGNGVAV SPVKPARATS QVPKRVPPSR TPEAPRSVPA CPIPEIPRPV 101: PARPTPETPR PVTARPTPEI PRPVPARPIS EVQTLVPTRP TSTAPSPVSA HPTSVVPSPV SVHPTSVAPS PVSACLTSEA SKPVLANPAA GIRRELVCSL 201: RALSMTTTPV RQRTTPSLLK SKKVEPPSPR ALQIRSRVKQ QAANATKIQQ GAIVEVGDKA KDHGSNEIRR SVSEEELSEL LQYLPAQNPT WNGRIMDSAS 301: PPEFDCEFWS KPASNIRRKA LRRSKAMPAL LKVELLPTCH ILNDVSGRSP TLLNVEMYLF PDEKKTERFT GEHATLFKAM VTRKVMAKAN INGTELLIFS 401: SKLLDKTSQF LINTQKKTEN FLWGFFLQTK NSLGLVPETA SQIDNDFDDG GVVDMDLDNE CLTPRVALKL ITESQKTPSR SPEKVKGEAS VPPGFEKIWT 501: PPLVKLNIQG TSNPLSDLTR SAGIVRDQSG KWVFGYIRCH KSIPEVVAGL LAIYQGLKYL WDSGFRRIHL ETTSFEIINA LTTKSSLFCK SKTLLGACKD 601: MILKEWECDI YHISKEQNSC AEWLAKRSEE QPQELVFFEY PPRGLMDFLE KDRLAAM |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)