AT5G54570.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : beta glucosidase 41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
|||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
beta glucosidase 41 (BGLU41); FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: plant-type cell wall; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Glycoside hydrolase, family 1 (InterPro:IPR001360), Glycoside hydrolase, family 1, active site (InterPro:IPR018120), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: beta glucosidase 40 (TAIR:AT1G26560.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr5:-:22167636..22170235 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 61466.50 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.33 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.41 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 535 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MESLMRLVLV LFPFFVVFFV PLDHVSSESI SRANFPDGFV FGTASSAYQF EGAVKEGNKG ESIWDTFTKE KPGKILDFSN ADTTVDQYHR FHNDIDLMKD 101: LRMDAYRFSI SWSRIFPNGT GEVNPDGVKY YNSLIDALLA KGIKPYVTLY HWDLPQALED RYEGWLSREV VDDFEHYAFT CFKAFGDRVK YWITFNEPHG 201: VSIQGYDTGI QAPGRCSLLG HWFCKKGKSS VEPYIVAHNI LLSHAAAYHT YQRNFKEKQR GQIGISLDAK WYEPMSDCDE DKDAARRAMD FGLGWFMDPL 301: INGDYPASMK SLVEERLPKI TPEMYKTIKG AFDYVGINHY TTLYARNDRT RIRKLILQDA SSDSAVITSS FRGGVAIGER AGSSWLHIVP WGIRKLAVYV 401: KDIYGNPPVF ITENGMDEKN SPFIDMEKAL KDDKRIGFHR DYLSNLSAAI RNDECDVRGY FVWSLLDNWE WNSGYTVRFG IYYVDYKNNL TRIPKASARW 501: FQTILSGSSS TSDSSKLILL EEATEQQQEY KFQEK |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)