AT5G53520.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.860 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : oligopeptide transporter 8 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
oligopeptide transporter | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
oligopeptide transporter 8 (OPT8); FUNCTIONS IN: oligopeptide transporter activity; INVOLVED IN: oligopeptide transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: sperm cell, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Tetrapeptide transporter, OPT1/isp4 (InterPro:IPR004648), Oligopeptide transporter OPT superfamily (InterPro:IPR004813); BEST Arabidopsis thaliana protein match is: oligopeptide transporter 1 (TAIR:AT4G27730.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:21743450..21745981 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 82083.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.11 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | 0.40 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 733 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKDFTDTISE SECDDEISIV PQVELTVPKT DDPTSPTVTF RMWVLGITAC VLLSFLNQFF WYRTNPLTIS SVSAQIAVVP IGHLMAKVLP TRRFFEGTRW 101: SFTMNPGPFS TKEHVLITVF ANSGSGAVYA THILSAVKLY YKRRLDFLPA LLVMITTQVL GFGWAGLYRK HLVEPGEMWW PSNLVQVSLF RALHEKENKS 201: KWGISRNQFF VITLITSFSY YLLPGYLFTV LTTVSWLCWI SPKSILVNQL GSGSAGLGIG SFGLDWSTIA SYLGSPLASP FFASANIAAG FFLVMYVITP 301: LCYYLDLYNA KTFPIYSGKL FVASGKEYKV TSIIDANFRL DRQAYAETGP VHMSTFFAVT YGLGFATLSA SIFHVLIFNG KDLWTQTRGA FGKNKKMDIH 401: TKIMKRNYKE VPLWWFLSIF AVNLAVIVFI CIYYKTQIQL PWWGAFLACL IAIFFTPLVG VIMATTNQAP GLNIITEYII GYAYPERPVA NICFKTYGYI 501: SMSQSLTFLS DLKLGTYMKI PPRTMFMAQV VGTLVAVIAY AGTAWWLMAE IPNLCDTNLL PPGSQWTCPS DRVFFDASVI WGLVGPRRMF GDLGEYSNIN 601: WFFVGGAIAP ALVYLASRLF PNKKWISDIH IPVLIGATAI MPPASAVNFT SWLVMAFVFG HFVFKYRREW WQRYNYVLSG GMDAGTGFMS VLLFLALQRS 701: EIAIDWWGNS GEGCPVAKCP TAKGVVVHGC PVF |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)