AT5G26070.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : hydroxyproline-rich glycoprotein family protein | ||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a protein with 23.5% proline residues and proline-rich extensin domains, INTERPRO:IPR002965; similar to root nodule extensin (Pisum sativum) gi:15021750/gb:AAK77902; Common family members: At5g19800, At5g57070, At1g72790 (Arabidopsis thaliana) | ||||||||||||||||||||
| Computational Description (TAIR10) |
hydroxyproline-rich glycoprotein family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT5G26080.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). | ||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:+:9106341..9106649 | ||||||||||||||||||||
| Molecular Weight (calculated) | 11479.00 Da | ||||||||||||||||||||
| IEP (calculated) | 10.43 | ||||||||||||||||||||
| GRAVY (calculated) | -0.26 | ||||||||||||||||||||
| Length | 102 amino acids | ||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MVSLGLSFTL VFLLAILFTV AEANNNRKLL KTPTNYQPLY SPSPSPYRSP VTLPPPPPHP AYSRPVALPP TLPIPHPSPH AERFYYRQSP PPPSGKPWWW 101: LL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)