AT5G04730.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.465 cytosol 0.457 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Ankyrin-repeat containing protein | ||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Ankyrin-repeat containing protein; BEST Arabidopsis thaliana protein match is: Ankyrin repeat family protein (TAIR:AT5G04700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr5:-:1364101..1367303 | ||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 69487.80 Da | ||||||||||||||||||||||||||||
| IEP (calculated) | 9.58 | ||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.12 | ||||||||||||||||||||||||||||
| Length | 603 amino acids | ||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MQVLGEICEN LSLSQQISDD DLERVKRNFL NLQTETITAL MDAFEITWQK TCSRRQLEIV KKLLLDEMTS RGQMENDAYC QSLALDIAAG NGNLTRVKQL 101: CEPHLNQPLA RNNSVRYGLA IPVVRASNAG HKKVTDYLYY NHYKRTLPLV LENDNDVYWA TCLLLDAIFY GFLDIALDII KHLPSVAVTK HARQRLPIYK 201: FIAVKPDLFR SHCNFGFWRH LIYSCIRVSE NPRPNRDNRL FCMTLPQSLL KWFGIKQTYD LKKRHSQAQK LLKQMCTSLR DIMAKNEIRW KETVYEALLE 301: AAKSGNRDFF IEIIKCNSQL LWILNPTSGR NLFQLAVEFK KEKIFNLIHG LDDRKVTLLR SYDKGNNNIL HIAGRLSTPD QLSKISGAAL KMQRESQWFK 401: EVESLVSERE VVQKNKDNKT PRQIFEHYHE HLRKEGEEWM KYTATACSFV AALIATVTFQ AIFTVPGGID GTSGSPLILN DLHFRAFIFT DTLAFFASCI 501: SVLIFLSILT SRYSFDDFIV SLPRKMILGQ SILFISIASM LVAFITSLSA SMRHKPALVY PLKPLASFPS LLFLMLQYPL LKEMISSTYG KRLFYRDTKN 601: WLP |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)