AT4G34300.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:extracellular 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Cupredoxin superfamily protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes protein with 14.7% glycine residues, similar to auxin response factor 30 (GI:20145855) {Arabidopsis thaliana} | ||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
Cupredoxin superfamily protein; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Cupredoxin (InterPro:IPR008972); BEST Arabidopsis thaliana protein match is: Cupredoxin superfamily protein (TAIR:AT4G33930.1); Has 49255 Blast hits to 16966 proteins in 1384 species: Archae - 116; Bacteria - 15915; Metazoa - 13419; Fungi - 4059; Plants - 2660; Viruses - 359; Other Eukaryotes - 12727 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:16412773..16413714 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 33065.10 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 10.27 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.80 | ||||||||||||||||||||||||||||||||
| Length | 313 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLSAARKLL VFLMVTVFLF SGSADAWSWS WGSGQSGSNG DWGWSSGGSF GSGSGGSDSN SGGSSWGWGW SSDGTDTNWG WGSSSGSNHS SGTGSTHNGH 101: SSGSNHSSGT GSTHNGHSSG SNHSSSTGST HNNHSSGSNH SSIVGSTHKN HGSGSNHSSI AGPTHNGHSS GSNHSSIIGS THNHTAPSLG RKIAVTVWKN 201: GYGYTEWTAK HAPFYVNDVL VFTYNNNDQT QSKTKHHHDK KKNDVYLLPD MKSFKRCNVA RGKKLVARGG SSSRGFKLLL RKVHTYYFVS GDHNDCNHNM 301: KFSVHPIPHP SSH |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)