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AT4G33800.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J1I0eggNOG:ENOG410Z950EMBL:AY088383EMBL:BT025736
EMBL:CP002687EnsemblPlants:AT4G33800EnsemblPlants:AT4G33800.1entrez:829522
GeneID:829522Gramene:AT4G33800.1hmmpanther:PTHR33347hmmpanther:PTHR33347:SF5
HOGENOM:HOG000090347KEGG:ath:AT4G33800OMA:YLHMETRPhylomeDB:Q8L9K4
Proteomes:UP000006548RefSeq:NP_567937.1TAIR:AT4G33800UniGene:At.31553
UniProt:Q8L9K4
Coordinates (TAIR10) chr4:-:16210404..16211307
Molecular Weight (calculated) 19427.30 Da
IEP (calculated) 4.70
GRAVY (calculated) -1.01
Length 170 amino acids
Sequence (TAIR10)
(BLAST)
001: MLGSSSGCES GWTLYLDQSV SSPSPSCFRD SNGFDSRRRS KDSWDQNYVH QEEEEEEDDL SMISDASSGP RNISEEDSVK KINIVGLKKQ CKREKKRRDY
101: EKMNSLLDDT ASSPLFNFPH MLQKSVGGNK IEQTFPESTL DYSQGFSATQ FQDKTAFQEQ CGYLHMETRF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)