AT4G32630.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.711 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : ArfGap/RecO-like zinc finger domain-containing protein | ||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
ArfGap/RecO-like zinc finger domain-containing protein; FUNCTIONS IN: ARF GTPase activator activity, zinc ion binding; INVOLVED IN: regulation of ARF GTPase activity; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 10 growth stages; CONTAINS InterPro DOMAIN/s: Arf GTPase activating protein (InterPro:IPR001164); BEST Arabidopsis thaliana protein match is: NSP (nuclear shuttle protein)-interacting GTPase (TAIR:AT4G13350.2); Has 2836 Blast hits to 2808 proteins in 240 species: Archae - 0; Bacteria - 12; Metazoa - 1420; Fungi - 478; Plants - 476; Viruses - 0; Other Eukaryotes - 450 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15738315..15741412 | ||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 68803.50 Da | ||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.59 | ||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.68 | ||||||||||||||||||||||||||||||||
| Length | 627 amino acids | ||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MKEDERTEKA IRSLLKLPEN RRCINCNSLG PQYVCSTFWT FVCVNCSGIH REFTHRVKSV SMAKFTADEV SALRAGGNER ARQIYFKEWD AHRDGYPDRS 101: NIFKLRDFIR SVYVDKRYSS SDKISQQKSD VTEDYRESKK TSAHVLGSRS LHSVDKSDIE RSSAAGRSGS ESLRFYFDDK NHKQQHVTHN PRSRGLPKSP 201: IRFEIVDDRF RDDGSVKRYD ARKDSRGSSK SLDLSSNKDM PSFPIVRHTS ELNIVKVEKK KDPVNNQMTA SSEKMEIPRS LIDDVPVSEL SDEGIIKNSS 301: EIPASLKTTE EPAPNSLEAL LFGSSVPSVV PGTNNYELWN TSDISSTENY TAVNLGTQTM PGIPDSVTSF ATSPTTAHAH SGSSGPVVPV APDNLNTKET 401: ATLANNQGPS DFSMEQTTLA ITDYAHGVGS EHHQDDETQS SIRKALPEDL FTGGFSFAPQ QVHGQHHGMG YGMQYYQYPV AMGALTYTAK AANPFDLSYD 501: DTAPNQTPQF PTMAYVQGGG LPHVSSPIGY SDSSSPAADS IGLMTSQSPF HATALSPNSP ALASHLSPGA LMGQQSQVNM SPSFRQEYSG LGTEGNTFNG 601: VHTFHQANNG YPSANPNAYV SRGNPFE |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)