AT4G24860.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 0.716 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : P-loop containing nucleoside triphosphate hydrolases superfamily protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
P-loop containing nucleoside triphosphate hydrolases superfamily protein; FUNCTIONS IN: nucleoside-triphosphatase activity, nucleotide binding, ATP binding; LOCATED IN: chloroplast; EXPRESSED IN: shoot apex, leaf whorl, sperm cell, sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: ATPase, AAA-type, core (InterPro:IPR003959), ATPase, AAA+ type, core (InterPro:IPR003593), ATPase, AAA-type, conserved site (InterPro:IPR003960); BEST Arabidopsis thaliana protein match is: AAA-type ATPase family protein (TAIR:AT1G62130.1); Has 36802 Blast hits to 34347 proteins in 3158 species: Archae - 1551; Bacteria - 15209; Metazoa - 4767; Fungi - 3515; Plants - 2998; Viruses - 28; Other Eukaryotes - 8734 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:12801580..12808190 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124157.00 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.84 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.36 | ||||||||||||||||||||||||||||||||||||
| Length | 1122 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVSPGRSDST SGENNNPPDG SSGKRSPSSP ADKSPSKRQK LEDGGDTLPP SDSSKCVLGD TTPTSGDSQI DASAAAATTS QPPPVAQAIL QEKASFERWT 0101: YVHSRFENPW CRLLSQSAQY PSINIFLSVF KFLDGELSSY SFKITRIQRK GNVLAVLETM GNNGHMWING NYAEGNINHV LNSGDEVVYQ QMPIVAAKPG 0201: SVQVPAGKFL DLERMTGHSI ISSLERLIHA SSKSHQAPES MVQVDGMEGI FSVNNQDSKM EILDEKNEVT SNSQQASTSG NGLQSAIFRE AIQAGFVRGE 0301: NMEVSFKNFP YYLSEYTKAA LLYASYIHLK KKEYVQFVSD MTPMNPRILL SGPAGSEIYQ ETLAKALARD LEAKLLIFDS YPILGFTRGK FLHLHLFVYF 0401: PDYGYEITAL TAKEVESLRD GLASNKSCKL PNQSIELIDQ GKSSDLSAGG GVASSLSPAA SSDSDSQLQL EPETLPRSVN HTLKKGMPPL HCLQQKILLQ 0501: SSWISGLRIL HLEEKNTCRG PPNGTTGKVI LVFDENPSAK VGVRFDKPIP DGVDLGELCE SGHGFFCKAT DLPFKSSSFK DLVRLLVNTL FEVVHSESRT 0601: CPFILFLKDA EKSVAGNFDL YSAFQIRLEY LPENVIVICS QTHSDHLKVK DIGRQKKQGK EVPHATELLA ELFENKITIQ MPQDEKRLTL WKHQMDRDAE 0701: TSKVKSNFNH LRMVLRRRGL GCEGLETTWS RMCLKDLTLQ RDSVEKIIGW AFGNHISKNP DTDPAKVTLS RESIEFGIGL LQNDLKGSTS SKKDIVVENV 0801: FEKRLLSDVI LPSDIDVTFD DIGALEKVKD ILKELVMLPL QRPELFCKGE LTKPCKGILL FGPPGTGKTM LAKAVAKEAD ANFINISMSS ITSKWFGEGE 0901: KYVKAVFSLA SKMSPSVIFV DEVDSMLGRR EHPREHEASR KIKNEFMMHW DGLTTQERER VLVLAATNRP FDLDEAVIRR LPRRLMVGLP DTSNRAFILK 1001: VILAKEDLSP DLDIGEIASM TNGYSGSDLK NLCVTAAHRP IKEILEKEKR ERDAALAQGK VPPPLSGSSD LRALNVEDFR DAHKWVSASV SSESATMTAL 1101: QQWNKLHGEG GSGKQQSFSF YT |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)