AT4G20770.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:mitochondrion 0.999 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : Pentatricopeptide repeat (PPR) superfamily protein | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
Pentatricopeptide repeat (PPR) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Pentatricopeptide repeat (PPR) superfamily protein (TAIR:AT3G02330.1); Has 56027 Blast hits to 13813 proteins in 239 species: Archae - 0; Bacteria - 4; Metazoa - 154; Fungi - 170; Plants - 55018; Viruses - 0; Other Eukaryotes - 681 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:11130762..11133086 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 86382.10 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.76 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.05 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 774 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MRSGGNKYLA SLLRCYRDER CKLSGKVIHG FIVRMGMKSD TYLCNRLLDL YIECGDGDYA RKVFDEMSVR DVYSWNAFLT FRCKVGDLGE ACEVFDGMPE 101: RDVVSWNNMI SVLVRKGFEE KALVVYKRMV CDGFLPSRFT LASVLSACSK VLDGVFGMRC HGVAVKTGLD KNIFVGNALL SMYAKCGFIV DYGVRVFESL 201: SQPNEVSYTA VIGGLARENK VLEAVQMFRL MCEKGVQVDS VCLSNILSIS APREGCDSLS EIYGNELGKQ IHCLALRLGF GGDLHLNNSL LEIYAKNKDM 301: NGAELIFAEM PEVNVVSWNI MIVGFGQEYR SDKSVEFLTR MRDSGFQPNE VTCISVLGAC FRSGDVETGR RIFSSIPQPS VSAWNAMLSG YSNYEHYEEA 401: ISNFRQMQFQ NLKPDKTTLS VILSSCARLR FLEGGKQIHG VVIRTEISKN SHIVSGLIAV YSECEKMEIS ECIFDDCINE LDIACWNSMI SGFRHNMLDT 501: KALILFRRMH QTAVLCPNET SFATVLSSCS RLCSLLHGRQ FHGLVVKSGY VSDSFVETAL TDMYCKCGEI DSARQFFDAV LRKNTVIWNE MIHGYGHNGR 601: GDEAVGLYRK MISSGEKPDG ITFVSVLTAC SHSGLVETGL EILSSMQRIH GIEPELDHYI CIVDCLGRAG RLEDAEKLAE ATPYKSSSVL WEILLSSCRV 701: HGDVSLARRV AEKLMRLDPQ SSAAYVLLSN TYSSLRQWDD SAALQGLMNK NRVHKTPGQS WTTYGNDLDS GFRK |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)