AT4G12860.1
Subcellular Consensus
(Prediction and Experimental) min: :max .
SUBAcon:cytosol 0.878 What is SUBAcon? |
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Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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Description (TAIR10) | protein_coding : EF hand calcium-binding protein family | ||||||||||||||||||||||||||||||||||||||||||||||||
Curator Summary (TAIR10) |
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Computational Description (TAIR10) |
unfertilized embryo sac 14 (UNE14); FUNCTIONS IN: calcium ion binding; INVOLVED IN: double fertilization forming a zygote and endosperm; LOCATED IN: cytoplasm; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: Parvalbumin (InterPro:IPR008080), EF-Hand 1, calcium-binding site (InterPro:IPR018247), EF-HAND 2 (InterPro:IPR018249), EF-hand-like domain (InterPro:IPR011992), Calcium-binding EF-hand (InterPro:IPR002048), EF-hand (InterPro:IPR018248); BEST Arabidopsis thaliana protein match is: ARF-GAP domain 11 (TAIR:AT3G07490.1); Has 24675 Blast hits to 17481 proteins in 1590 species: Archae - 2; Bacteria - 226; Metazoa - 10763; Fungi - 4223; Plants - 5412; Viruses - 0; Other Eukaryotes - 4049 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
Protein Annotations |
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Coordinates (TAIR10) | chr4:-:7538444..7538902 | ||||||||||||||||||||||||||||||||||||||||||||||||
Molecular Weight (calculated) | 17183.40 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
IEP (calculated) | 4.17 | ||||||||||||||||||||||||||||||||||||||||||||||||
GRAVY (calculated) | -0.59 | ||||||||||||||||||||||||||||||||||||||||||||||||
Length | 152 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
Sequence (TAIR10) (BLAST) |
001: MDRGELSRVF QMFDKNGDGK IAKNELKDFF KSVGIMVPEN EINEMIAKMD VNGDGAMDID EFGSLYQEMV EEKEEEEDMR EAFRVFDQNG DGFITDEELR 101: SVLASMGLKQ GRTLEDCKKM ISKVDVDGDG MVNFKEFKQM MRGGGFAALS SN |
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See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)